FC920490

Overview
NameFC920490
Unique NameFC920490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 52/200 (26.00%), Postives = 102/200 (51.00%), Query Frame = 1
Query:  178 DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN--------------------------GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +L +R K L  ++     + + +  E   +  ++   +E++K  + +P ++   +E++D N                            +V +++    ++ ++  ++ + LKP+  V +++ S  ++D LP E DS +  +   EKP  TY+D+GG D Q +E+ EA+ LP+   + +K +GI  P+G L+YGPPGTGK
Sbjct:   29 ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGK 228          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 42/83 (50.60%), Postives = 61/83 (73.49%), Query Frame = 1
Query:  451 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            V + R+   +   LPP+ D+S++++   EKPD+TY D+GGC  Q +++RE VE+PL H E +  +GIDPP+GVL+YGPPGTGK
Sbjct:  135 VGVDRNKYQIQIPLPPKIDASVTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKFVNLGIDPPKGVLMYGPPGTGK 217          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 1
Query:  343 EMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +  ++N  ++     + + V +   ++   ++    V   R+  A+   LPP+ D S++++   EKPDVTY D+GGC  Q + +RE VELPL   E + ++GIDPP+G++LYGPPGTGK
Sbjct:  108 QSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGK 226          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 53/146 (36.30%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  262 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            N K  +LR  EE++ +Q     +G+ ++ +D+   +V       + V +   ++   +  +  VAL   S  L  +LP + D  +SL+   + PD TY  +GG D Q +EI+E +ELP+ H EL+  +GI  P+GVLLYGPPGTGK
Sbjct:   49 NAKVRMLR--EELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGK 192          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  490 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            LPP  D S+++++  EKPDVTY+D+GGC  Q +++RE VELPL   E +  +GIDPP+G+LLYGPPGTGK
Sbjct:  187 LPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGK 256          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  490 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            LPP+ D S+++++  EKPD TY+DIGGC  Q ++IRE VELP+ H E + ++GIDPP+GVL YGPPG+GK
Sbjct:  183 LPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGK 252          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 63/207 (30.43%), Postives = 105/207 (50.72%), Query Frame = 1
Query:   82 MAASAMVLDPKPVSEPPPSTRSDLTEQWSDED-DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            M+ S  + D   +   P ST ++      D   D+ +    LQ QL+ ++ + E        L+ E+ R Q E + +++  L +    ++ +  + ++     +   +  LS    + L+    VA++  S ++  VL  E D+    +   E P VTY DIGG D Q +E+REAVE PL + E +  +G++PP GVLL+GPPGTGK
Sbjct:    1 MSRSPSLPDRPTLDVDPESTPAERLNALQDHYVDIVAVNGELQAQLDDVEARRE-------ELREEVNRLQRENETLKTASLYLATVEDLPEDGSAVIKQHGNNQEVLTELSPRLADTLEVGDRVAIN-DSFSVQRVLDDETDARAQAMEVDESPSVTYADIGGLDDQLREVREAVEDPLVNPEKFDAVGVEPPSGVLLHGPPGTGK 199          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7_XENLA (26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  451 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E +  +GI+PP+GVLL+GPPGTGK
Sbjct:  140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGK 222          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  451 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E +  +GI+PP+GVLL+GPPGTGK
Sbjct:  140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGK 222          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  451 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E +  +GI+PP+GVLL+GPPGTGK
Sbjct:  140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGK 222          
The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PRS6A_YEAST9.078e-2126.0026S protease regulatory subunit 6A OS=Saccharomyce... [more]
PRS7_DICDI1.186e-2050.6026S protease regulatory subunit 7 OS=Dictyostelium... [more]
PRS7_SCHPO3.450e-2037.8226S protease regulatory subunit 7 homolog OS=Schiz... [more]
PRS8_MANSE1.004e-1936.3026S protease regulatory subunit 8 OS=Manduca sexta... [more]
PRS7_YEAST1.004e-1958.5726S protease regulatory subunit 7 homolog OS=Sacch... [more]
PRS7B_ARATH1.004e-1958.5726S protease regulatory subunit 7 homolog B OS=Ara... [more]
PSMR1_HALSA3.814e-1930.43Proteasome-activating nucleotidase 1 OS=Halobacter... [more]
PRS7_XENLA3.814e-1949.4026S protease regulatory subunit 7 OS=Xenopus laevi... [more]
PRS7_RAT3.814e-1949.4026S protease regulatory subunit 7 OS=Rattus norveg... [more]
PRS7_PONAB3.814e-1949.4026S protease regulatory subunit 7 OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionC32009A12EF RVDevelop1 Citrus clementina cDNA clone C32009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bp
CTCGCCGGGGGACAATCATCAATCGACCAATCCTTCGTTACAATTTCTTG
CTGGTCACTCCAAATTCCTCTCAACAAAACAATGGCAGCCTCAGCGATGG
TTCTAGACCCGAAGCCAGTATCGGAGCCACCACCGTCAACAAGATCCGAT
CTGACGGAGCAATGGTCGGACGAAGACGACCTCTACAGCCGACTTAAATC
CCTGCAACGGCAGCTCGAGTTCATCGACATCCAAGAAGAGTACGTCAAAG
ACGAGCAAAAGAACTTGAAGCGTGAACTGCTACGCGCCCAGGAGGAGGTG
AAGCGGATCCAATCGGTGCCGTTGGTAATCGGACAGTTCATGGAGATGGT
GGACCAGAATAACGGCATCGTGGGGTCCACCACCGGCTCTAACTACTACG
TCAGGATTCTTAGCACTATTAATCGGGAGTTGTTGAAACCGTCCGCTTCC
GTCGCTCTCCACCGTCACTCTAACGCCCTTGTTGACGTTCTTCCGCCGGA
AGCCGATTCCAGTATTTCTCTTCTAAGCCAGTCCGAGAAGCCCGACGTTA
CTTATAATGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAG
GCTGTGGAGCTACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTAT
AGATCCTCCACGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAC
TA
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