FC920490

Overview
NameFC920490
Unique NameFC920490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  451 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E +  +GI+PP+GVLL+GPPGTGK
Sbjct:  140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGK 222          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  451 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E +  +GI+PP+GVLL+GPPGTGK
Sbjct:  140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGK 222          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  451 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E +  +GI+PP+GVLL+GPPGTGK
Sbjct:  140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGK 222          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  388 SNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            + + V +  ++    ++    V + R+   +   LP + D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E Y  +GI+PP+GVLLYGPPGTGK
Sbjct:  121 AKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGK 224          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  451 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E +  +GI+PP+GVLL+GPPGTGK
Sbjct:  140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGK 222          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 33/65 (50.77%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  505 DSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +  +S + +++ PDVTY DIGG   + +++RE +ELP+ H EL++++GI+PP+GVLL GPPGTGK
Sbjct:  162 EEPVSEIKETKVPDVTYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGK 226          

HSP 2 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = 1
Query:  535 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            E P+V + DIGG +  KQE+REAVE PL   E++++IG+ PP+GVLL+GPPGTGK
Sbjct:  445 EVPNVKWEDIGGLEEVKQELREAVEWPLKAKEVFEKIGVRPPKGVLLFGPPGTGK 499          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: CDC48_SCHPO (Cell division cycle protein 48 OS=Schizosaccharomyces pombe GN=cdc48 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  529 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +S   +V Y+DIGGC  Q  +IRE VELPL H +L+K IGI PPRG+L+YGPPGTGK
Sbjct:  215 ESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGK 271          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 1
Query:  541 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            PDVTY DIGG   + + +RE +ELPL H EL++++GI+PP+GVLLYGPPGTGK
Sbjct:  177 PDVTYEDIGGLKRELRLVREMIELPLKHPELFQRLGIEPPKGVLLYGPPGTGK 229          

HSP 2 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1
Query:  535 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            E P+V + DIGG +  KQE+ EAVE PL + E+++   I PPRG+LL+GPPGTGK
Sbjct:  448 EVPNVKWEDIGGLEHAKQELMEAVEWPLKYPEVFRAANIKPPRGILLFGPPGTGK 502          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: CDC48_YEAST (Cell division control protein 48 OS=Saccharomyces cerevisiae GN=CDC48 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+DIGGC  Q  +IRE VELPL H +L+K IGI PPRGVL+YGPPGTGK
Sbjct:  210 EVGYDDIGGCRKQMAQIREMVELPLRHPQLFKAIGIKPPRGVLMYGPPGTGK 261          

HSP 2 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  535 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            E  +VT++D+GG D  K+E++E VE P+ H + Y + G+ P +GVL YGPPGTGK
Sbjct:  480 ESVNVTWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLSPSKGVLFYGPPGTGK 534          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: CDC48_EMENI (Cell division control protein 48 OS=Emericella nidulans GN=cdc48 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+DIGGC  Q  +IRE VELPL H +L+K IGI PPRG+L+YGPPGTGK
Sbjct:  225 EVGYDDIGGCRKQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGK 276          
The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PRS7_MOUSE3.814e-1949.4026S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_MACFA3.814e-1949.4026S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN3.814e-1949.4026S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_CAEEL3.814e-1941.3526S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PRS7_BOVIN3.814e-1949.4026S protease regulatory subunit 7 OS=Bos taurus GN... [more]
Y1156_METJA7.444e-1550.77Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
CDC48_SCHPO7.444e-1563.16Cell division cycle protein 48 OS=Schizosaccharomy... [more]
Y1297_ARCFU1.658e-1464.15Cell division cycle protein 48 homolog AF_1297 OS=... [more]
CDC48_YEAST1.658e-1469.23Cell division control protein 48 OS=Saccharomyces ... [more]
CDC48_EMENI1.658e-1467.31Cell division control protein 48 OS=Emericella nid... [more]

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Properties
Property NameValue
Genbank descriptionC32009A12EF RVDevelop1 Citrus clementina cDNA clone C32009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bp
CTCGCCGGGGGACAATCATCAATCGACCAATCCTTCGTTACAATTTCTTG
CTGGTCACTCCAAATTCCTCTCAACAAAACAATGGCAGCCTCAGCGATGG
TTCTAGACCCGAAGCCAGTATCGGAGCCACCACCGTCAACAAGATCCGAT
CTGACGGAGCAATGGTCGGACGAAGACGACCTCTACAGCCGACTTAAATC
CCTGCAACGGCAGCTCGAGTTCATCGACATCCAAGAAGAGTACGTCAAAG
ACGAGCAAAAGAACTTGAAGCGTGAACTGCTACGCGCCCAGGAGGAGGTG
AAGCGGATCCAATCGGTGCCGTTGGTAATCGGACAGTTCATGGAGATGGT
GGACCAGAATAACGGCATCGTGGGGTCCACCACCGGCTCTAACTACTACG
TCAGGATTCTTAGCACTATTAATCGGGAGTTGTTGAAACCGTCCGCTTCC
GTCGCTCTCCACCGTCACTCTAACGCCCTTGTTGACGTTCTTCCGCCGGA
AGCCGATTCCAGTATTTCTCTTCTAAGCCAGTCCGAGAAGCCCGACGTTA
CTTATAATGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAG
GCTGTGGAGCTACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTAT
AGATCCTCCACGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAC
TA
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