FC920490

Overview
NameFC920490
Unique NameFC920490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: MPA_MYCLE (Proteasome-associated ATPase OS=Mycobacterium leprae GN=mpa PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  430 LLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            L+ P A  A  R   A V+ L  E           E PDV+Y DIGG   Q ++IR+AVELP  H ELY++  + PP+GVLLYGPPG GK
Sbjct:  221 LVDPKAGYAFERVPKAEVEDLVLE-----------EVPDVSYQDIGGLTRQIEQIRDAVELPFLHKELYREYALRPPKGVLLYGPPGCGK 299          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: CDC48_ENCCU (Cell division control protein 48 OS=Encephalitozoon cuniculi GN=CDC48 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1
Query:  547 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            V Y+D+GGC  Q  +IRE VELPL H +LY +IG+ PP+G+LLYGPPGTGK
Sbjct:  205 VGYDDVGGCRAQMAKIRELVELPLRHSQLYSKIGVKPPKGILLYGPPGTGK 255          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: SAV_SULAC (Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = 1
Query:  415 TINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            TI  E++K    V+++   NAL  + P       SLL +   E P V +NDIGG D  KQ++REAVE PL   EL+ + G+ PP+G+LL+GPPGTGK
Sbjct:  446 TIPAEIIK-ELKVSMNDFLNALKSIQP-------SLLREVYVEVPKVNWNDIGGLDNVKQQLREAVEWPLRFPELFTKSGVTPPKGILLFGPPGTGK 534          

HSP 2 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1
Query:  541 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            P V++ DIG  +  KQ+IRE VE P+ H EL++++GIDPP+G+LLYGPPGTGK
Sbjct:  207 PKVSWEDIGDLEEAKQKIREIVEWPMRHPELFQRLGIDPPKGILLYGPPGTGK 259          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: MPA_MYCTU (Proteasome-associated ATPase OS=Mycobacterium tuberculosis GN=mpa PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  433 LKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            L+P  S+ +   +    + +P    + +  L   E PDV+Y DIGG   Q ++IR+AVELP  H ELY++  + PP+GVLLYGPPG GK
Sbjct:  214 LRPGDSLLVDTKAGYAFERIPK---AEVEDLVLEEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGK 299          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: MPA_MYCBO (Proteasome-associated ATPase OS=Mycobacterium bovis GN=mpa PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  433 LKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            L+P  S+ +   +    + +P    + +  L   E PDV+Y DIGG   Q ++IR+AVELP  H ELY++  + PP+GVLLYGPPG GK
Sbjct:  214 LRPGDSLLVDTKAGYAFERIPK---AEVEDLVLEEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGK 299          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: TERA_XENTR (Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis GN=vcp PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGK
Sbjct:  200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: TERA_XENLA (Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGK
Sbjct:  200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGK
Sbjct:  200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGK
Sbjct:  200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGK
Sbjct:  200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251          
The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
MPA_MYCLE2.829e-1447.78Proteasome-associated ATPase OS=Mycobacterium lepr... [more]
CDC48_ENCCU3.694e-1464.71Cell division control protein 48 OS=Encephalitozoo... [more]
SAV_SULAC4.825e-1446.39Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE... [more]
MPA_MYCTU6.302e-1443.82Proteasome-associated ATPase OS=Mycobacterium tube... [more]
MPA_MYCBO6.302e-1443.82Proteasome-associated ATPase OS=Mycobacterium bovi... [more]
TERA_XENTR1.075e-1365.38Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
TERA_XENLA1.075e-1365.38Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
TERA_RAT1.075e-1365.38Transitional endoplasmic reticulum ATPase OS=Rattu... [more]
TERA_PIG1.075e-1365.38Transitional endoplasmic reticulum ATPase OS=Sus s... [more]
TERA_MOUSE1.075e-1365.38Transitional endoplasmic reticulum ATPase OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionC32009A12EF RVDevelop1 Citrus clementina cDNA clone C32009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bp
CTCGCCGGGGGACAATCATCAATCGACCAATCCTTCGTTACAATTTCTTG
CTGGTCACTCCAAATTCCTCTCAACAAAACAATGGCAGCCTCAGCGATGG
TTCTAGACCCGAAGCCAGTATCGGAGCCACCACCGTCAACAAGATCCGAT
CTGACGGAGCAATGGTCGGACGAAGACGACCTCTACAGCCGACTTAAATC
CCTGCAACGGCAGCTCGAGTTCATCGACATCCAAGAAGAGTACGTCAAAG
ACGAGCAAAAGAACTTGAAGCGTGAACTGCTACGCGCCCAGGAGGAGGTG
AAGCGGATCCAATCGGTGCCGTTGGTAATCGGACAGTTCATGGAGATGGT
GGACCAGAATAACGGCATCGTGGGGTCCACCACCGGCTCTAACTACTACG
TCAGGATTCTTAGCACTATTAATCGGGAGTTGTTGAAACCGTCCGCTTCC
GTCGCTCTCCACCGTCACTCTAACGCCCTTGTTGACGTTCTTCCGCCGGA
AGCCGATTCCAGTATTTCTCTTCTAAGCCAGTCCGAGAAGCCCGACGTTA
CTTATAATGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAG
GCTGTGGAGCTACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTAT
AGATCCTCCACGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAC
TA
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