FC920490

Overview
NameFC920490
Unique NameFC920490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGK
Sbjct:  200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: TERA_BOVIN (Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGK
Sbjct:  200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: TERA_DROME (Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila melanogaster GN=TER94 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1
Query:  547 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+L+YGPPGTGK
Sbjct:  198 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGK 248          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            DV Y+D+GG   Q  +IRE VELPL H +L+K IG+ PP+G+LLYGPPG+GK
Sbjct:  203 DVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGK 254          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: TERA1_CAEEL (Transitional endoplasmic reticulum ATPase homolog 1 OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            D+ Y+D+GG   Q  +I+E VELPL H +L+K IGI PPRG+LL+GPPGTGK
Sbjct:  206 DIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGPPGTGK 257          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: MPA_RHOER (Proteasome-associated ATPase OS=Rhodococcus erythropolis GN=mpa PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  433 LKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            L+P  S+ +   +    + +P    + +  L   E PDV Y+DIGG   Q ++IR+AVELP  H +L+ +  + PP+GVLLYGPPG GK
Sbjct:  196 LRPGDSLLVDTKAGYAFERIPK---AEVEDLVLEEVPDVHYDDIGGLGRQIEQIRDAVELPFLHKDLFHEYSLRPPKGVLLYGPPGCGK 281          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: VAT_THEAC (VCP-like ATPase OS=Thermoplasma acidophilum GN=vat PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1
Query:  547 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            ++Y DIGG   Q  +IRE +ELPL H EL++++GI PP+GV+LYGPPGTGK
Sbjct:  187 ISYEDIGGLSEQLGKIREMIELPLKHPELFERLGITPPKGVILYGPPGTGK 237          

HSP 2 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 47/131 (35.88%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  343 EMVDQNNGIVGSTTGSNYYVRILSTINR-----ELLKPSASVALHR-------HSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            EM D   G VG+   +      ++ + R     +L KP  +  L +         NAL  + P    SS+  +   E P+V ++DIGG +  K+EI+E VELPL   +++K++GI P +G LLYGPPG GK
Sbjct:  389 EMADYTYGFVGADLAALVRESAMNALRRYLPEIDLDKPIPTEILEKMVVTEDDFKNALKSIEP----SSLREV-MVEVPNVHWDDIGGLEDVKREIKETVELPLLKPDVFKRLGIRPSKGFLLYGPPGVGK 514          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: TERA_DANRE (Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+DIGG   Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGK
Sbjct:  200 EVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: CDCH_HALSA (Protein cdcH OS=Halobacterium salinarium GN=cdcH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 29/51 (56.86%), Postives = 43/51 (84.31%), Query Frame = 1
Query:  547 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +TY DIGG + + Q +RE VELP+ H ++++++GI+PP+GVLL+GPPGTGK
Sbjct:  186 ITYEDIGGLENEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGK 236          

HSP 2 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  535 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            E P +T++D+GG    K  ++E+VE PL   E + ++G++PP GVLLYGPPGTGK
Sbjct:  455 ELPKITWDDVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGK 509          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: CDC48_SOYBN (Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+D+GG   Q  +IRE VELPL H +L+K IG+ PP+G+LLYGPPG+GK
Sbjct:  204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGK 255          
The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
TERA_HUMAN1.075e-1365.38Transitional endoplasmic reticulum ATPase OS=Homo ... [more]
TERA_BOVIN1.075e-1365.38Transitional endoplasmic reticulum ATPase OS=Bos t... [more]
TERA_DROME2.395e-1364.71Transitional endoplasmic reticulum ATPase TER94 OS... [more]
CD48A_ARATH5.335e-1361.54Cell division control protein 48 homolog A OS=Arab... [more]
TERA1_CAEEL1.188e-1261.54Transitional endoplasmic reticulum ATPase homolog ... [more]
MPA_RHOER1.188e-1241.57Proteasome-associated ATPase OS=Rhodococcus erythr... [more]
VAT_THEAC1.552e-1260.78VCP-like ATPase OS=Thermoplasma acidophilum GN=vat... [more]
TERA_DANRE1.552e-1263.46Transitional endoplasmic reticulum ATPase OS=Danio... [more]
CDCH_HALSA1.552e-1256.86Protein cdcH OS=Halobacterium salinarium GN=cdcH P... [more]
CDC48_SOYBN1.552e-1259.62Cell division cycle protein 48 homolog OS=Glycine ... [more]

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Properties
Property NameValue
Genbank descriptionC32009A12EF RVDevelop1 Citrus clementina cDNA clone C32009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bp
CTCGCCGGGGGACAATCATCAATCGACCAATCCTTCGTTACAATTTCTTG
CTGGTCACTCCAAATTCCTCTCAACAAAACAATGGCAGCCTCAGCGATGG
TTCTAGACCCGAAGCCAGTATCGGAGCCACCACCGTCAACAAGATCCGAT
CTGACGGAGCAATGGTCGGACGAAGACGACCTCTACAGCCGACTTAAATC
CCTGCAACGGCAGCTCGAGTTCATCGACATCCAAGAAGAGTACGTCAAAG
ACGAGCAAAAGAACTTGAAGCGTGAACTGCTACGCGCCCAGGAGGAGGTG
AAGCGGATCCAATCGGTGCCGTTGGTAATCGGACAGTTCATGGAGATGGT
GGACCAGAATAACGGCATCGTGGGGTCCACCACCGGCTCTAACTACTACG
TCAGGATTCTTAGCACTATTAATCGGGAGTTGTTGAAACCGTCCGCTTCC
GTCGCTCTCCACCGTCACTCTAACGCCCTTGTTGACGTTCTTCCGCCGGA
AGCCGATTCCAGTATTTCTCTTCTAAGCCAGTCCGAGAAGCCCGACGTTA
CTTATAATGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAG
GCTGTGGAGCTACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTAT
AGATCCTCCACGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAC
TA
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