FC920490
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.309e-24 Identity = 57/196 (29.08%), Postives = 106/196 (54.08%), Query Frame = 1 Query: 175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG---------------------IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 +D+ + L ++ I + + E + K ++ QE++K + +P ++G +E+++ N ++ ++T ++ ++ ++ + LKP V +++ S ++D LP E DS + + EKP Y+DIGG + Q QE+ EA+ LP+TH E ++++G+ PP+GVLLYGPPGTGK Sbjct: 22 EDIIRASRLLDNEIRIIKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGK 217
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.309e-24 Identity = 60/229 (26.20%), Postives = 116/229 (50.66%), Query Frame = 1 Query: 115 PVSEPPPSTRSDLTEQWSDED--------------DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD-----------------QNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 P E P + + + W + + ++ R + L +++ + + V E + +K ++ E++K +++P ++ +E++D Q G ++ ++T Y++ ++ ++ E LKP V +++ S +++ LP + DS + + E+P Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YGPPGTGK Sbjct: 8 PTPESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 236
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24 Identity = 56/195 (28.72%), Postives = 108/195 (55.38%), Query Frame = 1 Query: 175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD-----------------QNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 +++ R + L +++ + + V E + ++ ++ E++K +++P ++ +E++D Q G ++ ++T Y++ ++ ++ E LKP V +++ S +++ LP E DS + + E+P Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YGPPGTGK Sbjct: 4 EEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 198
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24 Identity = 56/195 (28.72%), Postives = 108/195 (55.38%), Query Frame = 1 Query: 175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD-----------------QNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 +++ R + L +++ + + V E + ++ ++ E++K +++P ++ +E++D Q G ++ ++T Y++ ++ ++ E LKP V +++ S +++ LP E DS + + E+P Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YGPPGTGK Sbjct: 23 EEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 217
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4) HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24 Identity = 53/158 (33.54%), Postives = 100/158 (63.29%), Query Frame = 1 Query: 226 DIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 D Q + + ++L++ + + ++K +QS+ +IG+ M+ + + IV +++G Y V + ++++R LK V L + ++ +LP E D + ++ E+ ++T++ IGG Q +E+RE +ELPL + E+++++GI PP+GVLLYGPPGTGK Sbjct: 71 DDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGK 228
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23 Identity = 56/158 (35.44%), Postives = 96/158 (60.76%), Query Frame = 1 Query: 235 EEYVKDEQKNL---KRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 E V+ ++NL K+E + ++++K +QSV +IG+ + +D IV +++G Y V S +++E L V L + ++ LP E D + + + +++Y+ +GG Q +E+RE++ELPL + EL+ ++GI PP+GVLLYGPPGTGK Sbjct: 29 ESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGK 186
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23 Identity = 56/158 (35.44%), Postives = 96/158 (60.76%), Query Frame = 1 Query: 235 EEYVKDEQKNL---KRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 E V+ ++NL K+E + ++++K +QSV +IG+ + +D IV +++G Y V S +++E L V L + ++ LP E D + + + +++Y+ +GG Q +E+RE++ELPL + EL+ ++GI PP+GVLLYGPPGTGK Sbjct: 29 ESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGK 186
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23 Identity = 61/169 (36.09%), Postives = 96/169 (56.80%), Query Frame = 1 Query: 193 LKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 + LQRQL ++ ++ L + +EE++ +Q +G+ ++++ +N +V Y V I +I+ + PS VAL S L VLP + D ++L+ + PD TY+ IGG D Q +EI+E +ELP+ H EL++ +GI P+GVLLYGPPGTGK Sbjct: 40 IHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGK 208
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23 Identity = 56/178 (31.46%), Postives = 105/178 (58.99%), Query Frame = 1 Query: 166 SDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 S+ D + KS Q D + + ++ ++L ++ + ++++K +QSV +IG+ ++ +D IV +++G Y V + +++ L V+L + ++ +LP E D + +S + D+++ +GG + Q +E+RE +ELPL + EL+ ++GI PP+GVLLYGPPGTGK Sbjct: 2 SERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGK 179
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23 Identity = 64/169 (37.87%), Postives = 99/169 (58.58%), Query Frame = 1 Query: 193 LKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 L+ LQR+ + + E ++E + R L +EE++ +Q +G+ ++++ +N +V Y V I +I+ L PS VAL S L VLP + D ++L+ + PD TY+ IGG D Q +EI+E +ELP+ H EL++ +GI P+GVLLYGPPGTGK Sbjct: 43 LQRLQREKSYNLNRLEAQRNELNSRVRML---REELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGK 208 The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 147
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bpback to top |