FC920490

Overview
NameFC920490
Unique NameFC920490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 63/177 (35.59%), Postives = 96/177 (54.24%), Query Frame = 1
Query:  205 QRQLEFIDIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            Q  L  I+  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGK
Sbjct:   22 QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 49/196 (25.00%), Postives = 103/196 (52.55%), Query Frame = 1
Query:  175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQN---------------------NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            D+L SR + L+  ++ +  + + +  E+  +  ++   QE++   + +P ++G  +E++D                       + ++ ++T    ++ ++  +  E L P   + +++ S  ++D LP E DS +  +   EKP   Y+DIGG   Q +E+ EA+ LP+   + ++++G+ PP+G L++GPPGTGK
Sbjct:   37 DELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESANQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGK 232          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 48/131 (36.64%), Postives = 82/131 (62.60%), Query Frame = 1
Query:  319 PLVIGQFMEMVDQNNG----IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            PL + +  ++++ N+     ++     + + V +   ++   ++    V + R+   +   LPP+ D S+++++  EKPDVTYND+GGC  Q +++RE VELP+ H E + ++GIDPP+GVL YGPPGTGK
Sbjct:   84 PLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGK 214          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 48/131 (36.64%), Postives = 81/131 (61.83%), Query Frame = 1
Query:  319 PLVIGQFMEMVDQNNG----IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            PL + +  ++++ N      ++     + + V +   ++   ++    V + R+   +   LPP+ D S+++++  EKPDVTYND+GGC  Q +++RE VELP+ H E + ++GIDPP+GVL YGPPGTGK
Sbjct:   85 PLQVARCTKIINPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGK 215          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 48/131 (36.64%), Postives = 80/131 (61.07%), Query Frame = 1
Query:  319 PLVIGQFMEMVDQNNG----IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            PL + +  +++  N      ++     + + V +   ++   ++    V + R+   +   LPP+ D S+++++  EKPDVTYND+GGC  Q +++RE VELP+ H E + ++GIDPP+GVL YGPPGTGK
Sbjct:   85 PLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGK 215          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 65/203 (32.02%), Postives = 104/203 (51.23%), Query Frame = 1
Query:   91 SAMVLDPKPVSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +A V     V E   S      EQ   E +L  +++S    +  ++ Q   + D+ + +K       +E++ +Q     +G+ +++V     +V       Y V +   IN + LK S  V L   S  L  VL  +AD  +SL+   + PD TY+ +GG   Q +EI+E +ELP+ H EL++ +GI  P+GV+LYGPPGTGK
Sbjct:    2 TAAVTSSNIVLETHESGIKPYFEQKIQETEL--KIRSKTENVRRLEAQRNALNDKVRFIK-------DELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGK 195          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 52/149 (34.90%), Postives = 86/149 (57.72%), Query Frame = 1
Query:  253 EQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            ++  L   +   +EE++ + +    + + ++++ +N  +V       + V I  T++   L PS   AL   S  L  +LP + D  +SL+   + PD TY+ +GG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGK
Sbjct:   44 QRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGK 192          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 1
Query:  451 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            V + R+   +   LPP+ D S+++++  EKPDVTYND+GGC  Q +++RE VELP+ H E + ++GIDPP+GVL YGPPGTGK
Sbjct:  133 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGK 215          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 62/177 (35.03%), Postives = 95/177 (53.67%), Query Frame = 1
Query:  205 QRQLEFIDIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            Q  L  I+  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H E ++ +GI  P+GVLLYGPPGTGK
Sbjct:   17 QYYLSKIEDLQLVVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGK 191          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8_DROME (26S protease regulatory subunit 8 OS=Drosophila melanogaster GN=Pros45 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 55/146 (37.67%), Postives = 84/146 (57.53%), Query Frame = 1
Query:  262 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            N K  +LR  EE++ +Q     +G+ ++ +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  +GG D Q +EI+E +ELP+ H EL+  +GI  P+GVLLYGPPGTGK
Sbjct:   52 NAKVRMLR--EELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGK 195          
The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PRS8_BOVIN1.401e-2135.5926S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS6A_SCHPO2.389e-2125.0026S protease regulatory subunit 6A OS=Schizosaccha... [more]
PRS7_PRUPE3.120e-2136.6426S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7_SPIOL4.075e-2136.6426S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7_ORYSJ4.075e-2136.6426S protease regulatory subunit 7 OS=Oryza sativa ... [more]
PRS8_YEAST5.322e-2132.0226S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS8_DICDI5.322e-2134.9026S protease regulatory subunit 8 OS=Dictyostelium... [more]
PRS7A_ARATH5.322e-2153.0126S protease regulatory subunit 7 homolog A OS=Ara... [more]
PRS8_XENLA9.078e-2135.0326S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS8_DROME9.078e-2137.6726S protease regulatory subunit 8 OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionC32009A12EF RVDevelop1 Citrus clementina cDNA clone C32009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bp
CTCGCCGGGGGACAATCATCAATCGACCAATCCTTCGTTACAATTTCTTG
CTGGTCACTCCAAATTCCTCTCAACAAAACAATGGCAGCCTCAGCGATGG
TTCTAGACCCGAAGCCAGTATCGGAGCCACCACCGTCAACAAGATCCGAT
CTGACGGAGCAATGGTCGGACGAAGACGACCTCTACAGCCGACTTAAATC
CCTGCAACGGCAGCTCGAGTTCATCGACATCCAAGAAGAGTACGTCAAAG
ACGAGCAAAAGAACTTGAAGCGTGAACTGCTACGCGCCCAGGAGGAGGTG
AAGCGGATCCAATCGGTGCCGTTGGTAATCGGACAGTTCATGGAGATGGT
GGACCAGAATAACGGCATCGTGGGGTCCACCACCGGCTCTAACTACTACG
TCAGGATTCTTAGCACTATTAATCGGGAGTTGTTGAAACCGTCCGCTTCC
GTCGCTCTCCACCGTCACTCTAACGCCCTTGTTGACGTTCTTCCGCCGGA
AGCCGATTCCAGTATTTCTCTTCTAAGCCAGTCCGAGAAGCCCGACGTTA
CTTATAATGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAG
GCTGTGGAGCTACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTAT
AGATCCTCCACGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAC
TA
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