FC920492

Overview
NameFC920492
Unique NameFC920492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15544 contig Ccv1_Contig15544:86..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATM_BOVIN (Aspartate aminotransferase, mitochondrial OS=Bos taurus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.751e-56
Identity = 105/215 (48.84%), Postives = 147/215 (68.37%), Query Frame = 3
Query:   63 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            + S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG ++  +K  R  TVQ +SGTG+LR+GA FL R +     +++P+PTWGNH  +F  AG+ +++YRYYDP T G +F G +ED+   P+ +++LLHACAHNPTGVDP  EQW+++  +++   L  FF
Sbjct:   29 ASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATVVKKNNLFAFF 242          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC_PIG (Aspartate aminotransferase, cytoplasmic OS=Sus scrofa GN=GOT1 PE=1 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 2.287e-56
Identity = 111/222 (50.00%), Postives = 147/222 (66.22%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            M   SVF ++ +A    +  +   + +D  P K+NLGVGAYRT++ +P VL VVRK EQ + ND S   EYLPI+GL +F   +++L LG DSPA+++ RV  VQ L GTG+LR+GAEFLAR Y+        +Y+  PTW NH  VFT AG   +++YRY+D   RGL+ QG L DL  AP  +I +LHACAHNPTG DPT EQW+QI  +M+ + L PFF
Sbjct:    1 MAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFF 222          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATM_MOUSE (Aspartate aminotransferase, mitochondrial OS=Mus musculus GN=Got2 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.987e-56
Identity = 107/204 (52.45%), Postives = 142/204 (69.61%), Query Frame = 3
Query:   96 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG ++  +K  R  TVQ +SGTG+LRVGA FL R +     +++P+P+WGNH  +F  AG+ ++ YRYYDP T G +F G LED+   P  +++LLHACAHNPTGVDP  EQW++I  +++ K L  FF
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIASVVKKKNLFAFF 242          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATM_PIG (Aspartate aminotransferase, mitochondrial OS=Sus scrofa GN=GOT2 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.096e-56
Identity = 106/215 (49.30%), Postives = 146/215 (67.91%), Query Frame = 3
Query:   63 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            + S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG ++  +K  R  TVQ +SGTG+LR+GA FL R +     +++P+P+WGNH  +F  AG+ + +YRYYDP T G +F G LED+   P+ +++LLHACAHNPTGVDP  EQW+++  L++   L  FF
Sbjct:   29 ASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLHSYRYYDPKTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKKNNLFAFF 242          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATM_HUMAN (Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.096e-56
Identity = 106/204 (51.96%), Postives = 142/204 (69.61%), Query Frame = 3
Query:   96 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG +S  +K  R  TVQ +SGTG+LR+GA FL R +     +++P+PTWGNH  +F  AG+ ++ YRYYDP T G +F G +ED+   P  +++LLHACAHNPTGVDP  EQW++I  +++ + L  FF
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKRNLFAFF 242          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC_RAT (Aspartate aminotransferase, cytoplasmic OS=Rattus norvegicus GN=Got1 PE=1 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 8.692e-56
Identity = 107/222 (48.20%), Postives = 147/222 (66.22%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            M   S F ++ +AP   +  +   +  D  P K+NLGVGAYRT++ +P VL VVRK EQ + ND S   EYLPI+GL +F   +++L+LG +SPA+++NRV  VQ L GTG+LR+GA+FL R Y+        +Y+  PTW NH  VF+ AG   +++YRY+D   RGL+ QG L DL  AP  +I +LHACAHNPTG DPT E+W+QI  +M+ + L PFF
Sbjct:    1 MAPPSFFAQVPQAPPVLVFKLIADFRDDPDPRKVNLGVGAYRTDDSQPWVLPVVRKVEQKIANDHSLNHEYLPILGLAEFRSCASQLVLGDNSPALRENRVGGVQSLGGTGALRIGADFLGRWYNGTDNKNTPVYVSSPTWENHNGVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIFVLHACAHNPTGTDPTEEEWKQIAAVMKRRFLFPFF 222          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATM_PONAB (Aspartate aminotransferase, mitochondrial OS=Pongo abelii GN=GOT2 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.483e-55
Identity = 105/204 (51.47%), Postives = 142/204 (69.61%), Query Frame = 3
Query:   96 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG +S  +K  R  TVQ +SGTG+LR+GA FL R +     +++P+P+WGNH  +F  AG+ ++ YRYYDP T G +F G +ED+   P  +++LLHACAHNPTGVDP  EQW++I  +++ + L  FF
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKRNLFAFF 242          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATM_MACFA (Aspartate aminotransferase, mitochondrial OS=Macaca fascicularis GN=GOT2 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.483e-55
Identity = 105/204 (51.47%), Postives = 142/204 (69.61%), Query Frame = 3
Query:   96 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG +S  +K  R  TVQ +SGTG+LR+GA FL R +     +++P+P+WGNH  +F  AG+ ++ YRYYDP T G +F G +ED+   P  +++LLHACAHNPTGVDP  EQW++I  +++ + L  FF
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKRNLFAFF 242          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATM_SCHPO (Aspartate aminotransferase, mitochondrial OS=Schizosaccharomyces pombe GN=aat1 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.529e-55
Identity = 108/205 (52.68%), Postives = 138/205 (67.32%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            V+  +   P DPI G+T AY KD    K+NLG G YR + GKP VL  VR+AE  L++ Q   KEY PI G+  F   + KL  G    +IKD R+ + Q +SGTG+L + A FLA  Y   TIY+  PTWGNH  VF+ AGL+VK+Y+YYDPATRGL+ +G+L DL +AP G+I+LLHACAHNPTGVDPT  QW+ I + M+ K
Sbjct:   39 VWADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLS-QKLDKEYAPITGIPSFRVQATKLAYGDVYESIKD-RLVSAQSISGTGALCIAANFLASFYPSKTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKGMLSDLTSAPDGSIILLHACAHNPTGVDPTKAQWDDILKTMQKK 241          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC_HORSE (Aspartate aminotransferase, cytoplasmic OS=Equus caballus GN=GOT1 PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.303e-55
Identity = 108/222 (48.65%), Postives = 148/222 (66.67%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            M S S+F ++ +A    +  +T  + +D  P K+NLGVGAYRT++ +P VL VVRK EQ + N+ S   EYLPI+GL +F   +++L LG DSPA+++ RV  VQ L GTG+LR+GAEFL+R Y+        +Y+  PTW NH  VF+ AG   +++Y Y+D   RGL+ QG L DL  AP  +I +LHACAHNPTG DPT EQW+QI  +M+ + L PFF
Sbjct:    1 MTSPSIFVEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQKIANNSSLNHEYLPILGLAEFRSCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLSRWYNGTNNKNTPVYVSSPTWENHNGVFSGAGFKDIRSYHYWDATKRGLDLQGFLNDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFF 222          
The following BLAST results are available for this feature:
BLAST of FC920492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
AATM_BOVIN1.751e-5648.84Aspartate aminotransferase, mitochondrial OS=Bos t... [more]
AATC_PIG2.287e-5650.00Aspartate aminotransferase, cytoplasmic OS=Sus scr... [more]
AATM_MOUSE2.987e-5652.45Aspartate aminotransferase, mitochondrial OS=Mus m... [more]
AATM_PIG5.096e-5649.30Aspartate aminotransferase, mitochondrial OS=Sus s... [more]
AATM_HUMAN5.096e-5651.96Aspartate aminotransferase, mitochondrial OS=Homo ... [more]
AATC_RAT8.692e-5648.20Aspartate aminotransferase, cytoplasmic OS=Rattus ... [more]
AATM_PONAB1.483e-5551.47Aspartate aminotransferase, mitochondrial OS=Pongo... [more]
AATM_MACFA1.483e-5551.47Aspartate aminotransferase, mitochondrial OS=Macac... [more]
AATM_SCHPO2.529e-5552.68Aspartate aminotransferase, mitochondrial OS=Schiz... [more]
AATC_HORSE3.303e-5548.65Aspartate aminotransferase, cytoplasmic OS=Equus c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32009B02EF RVDevelop1 Citrus clementina cDNA clone C32009B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920492 ID=FC920492; Name=FC920492; organism=Citrus clementina; type=EST; length=704bp
GATTTTTTTTTCCCCCACAAACTCTCTCTTTTCATTGATTTCTTGAAAGA
AATTTAATGGATTCTGAATCAGTGTTTGGAAAGATTGTTCGTGCTCCTGA
AGATCCCATTCTAGGGGTCACTGTTGCTTATAACAAGGATACAAGCCCAG
TCAAGTTGAACTTGGGTGTTGGTGCTTACCGAACTGAGGAAGGGAAACCT
CTGGTTCTGAATGTAGTGAGAAAGGCAGAGCAGCTCTTAGTGAATGACCA
GTCACGGGTCAAAGAGTATCTTCCCATTGTTGGACTTGTGGATTTTAATA
AATTGAGTGCAAAGCTCATCCTTGGTGCTGACAGCCCTGCGATTAAAGAC
AACAGAGTGACCACCGTTCAGTGCTTGTCTGGCACTGGTTCTTTGAGGGT
TGGAGCTGAGTTTCTGGCAAGGCATTATCACCAACTTACCATATATATTC
CACAGCCAACATGGGGAAACCATCCCAAAGTTTTCACTTTAGCAGGATTG
TCTGTGAAGACCTACCGCTATTATGATCCAGCAACACGTGGGCTAAACTT
CCAAGGCTTGCTGGAGGATCTTAGGGCTGCACCATCCGGAGCTATAGTTC
TTCTTCATGCATGTGCTCATAATCCAACTGGTGTTGACCCGACCCTTGAG
CAGTGGGAGCAGATCAGGCAGCTGATGAGGTCAAAAGGATTGTTACCTTT
CTTT
back to top