FC920492

Overview
NameFC920492
Unique NameFC920492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15544 contig Ccv1_Contig15544:86..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC_DICDI (Aspartate aminotransferase, cytoplasmic OS=Dictyostelium discoideum GN=aatB PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.091e-53
Identity = 105/212 (49.53%), Postives = 143/212 (67.45%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTI-YIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPF 701
            ++F  +   P DPILGV+ A+  DT P K++  VGAYR E GKP VL  V +AE+ L+      KEYLPI G+ +FNKLSAKL+ G D+   K+ R+ TVQ LSGTG+LR+G  F+ ++    T+ YI +P+W NH  +   +G+    Y YYDP T+GL+F G++ D+RAAP+G++ +LH CAHNPTGVDPT EQW  I  +MR K  +PF
Sbjct:   39 TLFANVPLGPVDPILGVSTAFKADTDPRKVDTSVGAYRDENGKPYVLKCVFEAEKRLLGAP---KEYLPIDGIPEFNKLSAKLLYG-DAMVGKEKRMVTVQALSGTGALRIGIIFIRKYLPAGTVVYISRPSWTNHHNICKESGVQSAEYAYYDPKTKGLDFTGMINDMRAAPNGSVFVLHLCAHNPTGVDPTHEQWNIIADVMREKNHIPF 246          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AAT1_ARATH (Aspartate aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=ASP1 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.994e-53
Identity = 108/217 (49.77%), Postives = 138/217 (63.59%), Query Frame = 3
Query:   54 LMDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            L    S +  +  AP+DPILGVT A+  D SP K+N+GVGAYR + GKP+VL  VR+AE+ L    S   EYLP+ G      L+ KL  G +S  IKD R+  VQ LSGTG+ R+ A+F  R      IYIP PTW NH  ++  A +  KTY YY P T+GL+F  L++D++ AP G+  LLHACAHNPTGVDPT EQW +I QL ++K    FF
Sbjct:   26 LRSMSSWWKSVEPAPKDPILGVTEAFLADPSPEKVNVGVGAYRDDNGKPVVLECVREAEKRLAG--STFMEYLPMGGSAKMVDLTLKLAYGDNSEFIKDKRIAAVQTLSGTGACRLFADFQKRFSPGSQIYIPVPTWSNHHNIWKDAQVPQKTYHYYHPETKGLDFSALMDDVKNAPEGSFFLLHACAHNPTGVDPTEEQWREISQLFKAKKHFAFF 240          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC_CAEEL (Probable aspartate aminotransferase, cytoplasmic OS=Caenorhabditis elegans GN=T01C8.5 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.945e-52
Identity = 101/213 (47.42%), Postives = 139/213 (65.26%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            S F  I  AP   +      Y  +T+PVK+NL +GAYRTEEG+P VL VV + E  + ND S   EYLP++G   F K + +L+LGA+SPAIK+ R   VQCLSGTG+LR GAEFLA   +  T+Y+  PTWGNH  VF  AG  +V  Y ++D   + ++ +  L DL +AP  ++++LH CAHNPTG+DPT EQW+ + ++++ K L  FF
Sbjct:    2 SFFDGIPVAPPIEVFHKNKMYLDETAPVKVNLTIGAYRTEEGQPWVLPVVHETEVEIANDTSLNHEYLPVLGHEGFRKAATELVLGAESPAIKEERSFGVQCLSGTGALRAGAEFLASVCNMKTVYVSNPTWGNHKLVFKKAGFTTVADYTFWDYDNKRVHIEKFLSDLESAPEKSVIILHGCAHNPTGMDPTQEQWKLVAEVIKRKNLFTFF 214          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AAT_HAEIN (Aspartate aminotransferase OS=Haemophilus influenzae GN=aspC PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.127e-50
Identity = 92/211 (43.60%), Postives = 133/211 (63.03%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            +F  I  AP DPILG+  A+  +T   K+NLG+G Y+  +G   +++ V++AE+ L  D+ + K YL I G+ D+N+ +  L+ G DS  I+ NR  TVQ L GTG+LR+ AEF+ R      ++I  PTW NH  +F   G++++ YRYYD   + L+++ LLEDL  A  G +VLLH C HNPTG+DPT EQW+++  L    G LP F
Sbjct:    1 MFEHIKAAPADPILGLGEAFKSETRENKINLGIGVYKDAQGTTPIMHAVKEAEKRLF-DKEKTKNYLTIDGIADYNEQTKALLFGKDSEVIQSNRARTVQSLGGTGALRIAAEFIKRQTKAQNVWISTPTWPNHNAIFNAVGMTIREYRYYDAERKALDWEHLLEDLSQASEGDVVLLHGCCHNPTGIDPTPEQWQELAALSAKNGWLPLF 210          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AAT_PSEAE (Aspartate aminotransferase OS=Pseudomonas aeruginosa GN=aspC PE=3 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.588e-49
Identity = 96/211 (45.50%), Postives = 137/211 (64.93%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPF 701
            S+F  +  AP DPILG+  A+N DT P K+NLGVG Y  EEG+  +L  V+ AE+  +   +  + YLPI G+  +++   KL+ G +S  +   RV T Q + GTG+L++GA+FL R     T+ I  P+W NH  +F  AG  V+ YRYYD A+ G+N  GLLEDL A P+ +IV+LHAC HNPTGVD  L+ W+Q+  ++++KG +PF
Sbjct:    2 SLFSAVEMAPRDPILGLNEAFNADTRPGKINLGVGVYYNEEGRIPLLRAVQAAEKARIEAHAP-RGYLPIEGIAAYDQGVQKLLFGNESELLAAGRVVTTQAVGGTGALKLGADFLKRLLPDATVAISDPSWENHRALFEAAGFPVQNYRYYDAASNGVNRAGLLEDLNALPARSIVVLHACCHNPTGVDLELDDWKQVLDVLKAKGHVPF 211          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AAT_ECOLI (Aspartate aminotransferase OS=Escherichia coli (strain K12) GN=aspC PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.033e-49
Identity = 95/211 (45.02%), Postives = 128/211 (60.66%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ +++  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++     +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H C HNPTG+DPTLEQW+ + QL   KG LP F
Sbjct:    1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AAT_SALTI (Aspartate aminotransferase OS=Salmonella typhi GN=aspC PE=3 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 6.670e-48
Identity = 93/211 (44.08%), Postives = 128/211 (60.66%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ +++  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LR+ A+FLA++     +++  P+W NH  VF  AGL V+ Y YYD     L+F+ L   L  A +G +VL H C HNPTG+DPTLEQW+ + +L   KG LP F
Sbjct:    1 MFENITAAPADPILGLADLFRADDRPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET-TKNYLGIDGIPEFARCTQELLFGKGSALINDKRARTAQTPGGTGALRIAADFLAKNTPVKRVWVSNPSWPNHKSVFNAAGLEVREYAYYDAENHSLDFEALQASLSEAQAGDVVLFHGCCHNPTGIDPTLEQWQVLAELSVEKGWLPLF 210          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AAT_SALTY (Aspartate aminotransferase OS=Salmonella typhimurium GN=aspC PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.138e-47
Identity = 93/211 (44.08%), Postives = 128/211 (60.66%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ +++  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LR+ A+FLA++     +++  P+W NH  VF  AGL V+ Y YYD     L+F+ L   L  A +G +VL H C HNPTG+DPTLEQW+ + +L   KG LP F
Sbjct:    1 MFENITAAPADPILGLADLFRADDRPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET-TKNYLGIDGIPEFARCTQELLFGKGSALINDKRARTAQTPGGTGALRIAADFLAKNTPVKRVWVSNPSWPNHKSVFNAAGLEVREYAYYDAENHTLDFEALQASLSEAQAGDVVLFHGCCHNPTGIDPTLEQWQVLAELSVEKGWLPLF 210          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC_YEAST (Aspartate aminotransferase, cytoplasmic OS=Saccharomyces cerevisiae GN=AAT2 PE=1 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 4.324e-47
Identity = 91/214 (42.52%), Postives = 130/214 (60.75%), Query Frame = 3
Query:   63 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            S ++F  I   P D + G+   Y +D    K++LG+GAYR + GKP VL  V+ AE+L+ ND S   EYL I GL      +AK+I G  S A +++RV +VQ LSGTG+L + A+F ++ +    +Y+ +PTW NH  +F   GL   TY Y+   T+ L+  G L  ++ AP G+I +LH+CAHNPTG+DPT EQW QI   + SK  +  F
Sbjct:    2 SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDAFQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALF 215          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: TYRB_ECOLI (Aromatic-amino-acid aminotransferase OS=Escherichia coli (strain K12) GN=tyrB PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.469e-42
Identity = 84/210 (40.00%), Postives = 124/210 (59.05%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPF 701
            +F K+     DPIL +   + +D    K+NL +G Y  E+G    L  V +AE  L         YLP+ GL  +    A L+ GAD P +K  RV T+Q L G+G+L+VGA+FL R++ +  +++  PTW NH  +F  AG  V TY +YD AT G+ F  LL  L+  P+ +IVLLH C HNPTG D T +QW+ + ++++++ L+PF
Sbjct:    1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPF 210          
The following BLAST results are available for this feature:
BLAST of FC920492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
AATC_DICDI3.091e-5349.53Aspartate aminotransferase, cytoplasmic OS=Dictyos... [more]
AAT1_ARATH8.994e-5349.77Aspartate aminotransferase, mitochondrial OS=Arabi... [more]
AATC_CAEEL9.945e-5247.42Probable aspartate aminotransferase, cytoplasmic O... [more]
AAT_HAEIN7.127e-5043.60Aspartate aminotransferase OS=Haemophilus influenz... [more]
AAT_PSEAE1.588e-4945.50Aspartate aminotransferase OS=Pseudomonas aerugino... [more]
AAT_ECOLI6.033e-4945.02Aspartate aminotransferase OS=Escherichia coli (st... [more]
AAT_SALTI6.670e-4844.08Aspartate aminotransferase OS=Salmonella typhi GN=... [more]
AAT_SALTY1.138e-4744.08Aspartate aminotransferase OS=Salmonella typhimuri... [more]
AATC_YEAST4.324e-4742.52Aspartate aminotransferase, cytoplasmic OS=Sacchar... [more]
TYRB_ECOLI5.469e-4240.00Aromatic-amino-acid aminotransferase OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionC32009B02EF RVDevelop1 Citrus clementina cDNA clone C32009B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920492 ID=FC920492; Name=FC920492; organism=Citrus clementina; type=EST; length=704bp
GATTTTTTTTTCCCCCACAAACTCTCTCTTTTCATTGATTTCTTGAAAGA
AATTTAATGGATTCTGAATCAGTGTTTGGAAAGATTGTTCGTGCTCCTGA
AGATCCCATTCTAGGGGTCACTGTTGCTTATAACAAGGATACAAGCCCAG
TCAAGTTGAACTTGGGTGTTGGTGCTTACCGAACTGAGGAAGGGAAACCT
CTGGTTCTGAATGTAGTGAGAAAGGCAGAGCAGCTCTTAGTGAATGACCA
GTCACGGGTCAAAGAGTATCTTCCCATTGTTGGACTTGTGGATTTTAATA
AATTGAGTGCAAAGCTCATCCTTGGTGCTGACAGCCCTGCGATTAAAGAC
AACAGAGTGACCACCGTTCAGTGCTTGTCTGGCACTGGTTCTTTGAGGGT
TGGAGCTGAGTTTCTGGCAAGGCATTATCACCAACTTACCATATATATTC
CACAGCCAACATGGGGAAACCATCCCAAAGTTTTCACTTTAGCAGGATTG
TCTGTGAAGACCTACCGCTATTATGATCCAGCAACACGTGGGCTAAACTT
CCAAGGCTTGCTGGAGGATCTTAGGGCTGCACCATCCGGAGCTATAGTTC
TTCTTCATGCATGTGCTCATAATCCAACTGGTGTTGACCCGACCCTTGAG
CAGTGGGAGCAGATCAGGCAGCTGATGAGGTCAAAAGGATTGTTACCTTT
CTTT
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