FC920504

Overview
NameFC920504
Unique NameFC920504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8297 contig Ccv1_Contig8297:332..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK22_CHICK (Casein kinase II subunit alpha' OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.552e-53
Identity = 99/166 (59.64%), Postives = 121/166 (72.89%), Query Frame = 1
Query:  241 IPLPAM-SKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            +P PA  S+ARVY +VN LR +EYWDYE+    WG+QDDY++VRK+GRGKYSEVFE IN+  NER                    L+NL GG N++ L+D V+D  SKTP+L+FEY+N+TDFK LY  LTD+DIR+Y+YELLKALDYCHS G MHRDVKPHN MID
Sbjct:    1 MPGPAAGSRARVYAEVNSLRSREYWDYEAHVPSWGNQDDYQLVRKLGRGKYSEVFEAINITNNERVVVKILKPVKKKKIKREVKILENLRGGTNIINLIDTVKDPVSKTPALVFEYINNTDFKQLYQILTDFDIRFYMYELLKALDYCHSMGIMHRDVKPHNVMID 166          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK2A_THEAN (Casein kinase II subunit alpha OS=Theileria annulata GN=TA10630 PE=3 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.160e-52
Identity = 93/156 (59.62%), Postives = 116/156 (74.36%), Query Frame = 1
Query:  268 RVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            + Y DVN  +  EYWDYE++T++W   D YE+VRK+GRGK+SEVFEG+N  T ++C                   LQNL GGPN++KLLDIV+D  S+TPSLIFE+VN+TDFK LYPTLT  DI+YYIY+LLKA++YCHSQG MHRD+KPHN MID
Sbjct:   26 KTYADVNSKKGPEYWDYENITLKWNVPDSYEIVRKIGRGKFSEVFEGLNTVTKDKCVIKILKPVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPQSRTPSLIFEHVNNTDFKTLYPTLTIQDIKYYIYQLLKAMNYCHSQGIMHRDIKPHNVMID 181          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK2A_THEPA (Casein kinase II subunit alpha OS=Theileria parva GN=TP04_0659 PE=3 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.685e-52
Identity = 93/156 (59.62%), Postives = 116/156 (74.36%), Query Frame = 1
Query:  268 RVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            + Y DVN  +  EYWDYE++T++W   D YE+VRK+GRGK+SEVFEGIN  T ++C                   LQNL GGPN++KLLDIV+D  S+TPSLIFE+VN+TDFK LYPTL+  DI+YYIY+LLKA++YCHSQG MHRD+KPHN MID
Sbjct:   26 KTYADVNSKKGPEYWDYENITLKWNVPDSYEIVRKIGRGKFSEVFEGINTVTKDKCVIKILKPVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPQSRTPSLIFEHVNNTDFKTLYPTLSIQDIKYYIYQLLKAMNYCHSQGIMHRDIKPHNVMID 181          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: Y6481_DICDI (Probable serine/threonine-protein kinase DDB_G0286481 OS=Dictyostelium discoideum GN=DDB_G0286481 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.515e-41
Identity = 79/157 (50.32%), Postives = 105/157 (66.88%), Query Frame = 1
Query:  265 ARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            ++VY DVN  +PK Y+DYE   + W + D YEV++K+GRGKYSEVF GI++ T++                     L++L GGPN++ LLD V+DQ SK  SL+F +VN TD + L  TL DYDIRYYI+ELLKA+DY HS+G +HRD+KP N  ID
Sbjct:  282 SKVYRDVNENQPKSYYDYEGYRINWKNVDRYEVIQKIGRGKYSEVFSGIDIETSDEVVIKVLKPVQKLKIQREIKILESLNGGPNIIPLLDSVKDQSSKVCSLVFPFVNKTDIRELVYTLDDYDIRYYIFELLKAIDYTHSKGIIHRDIKPLNIAID 438          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK22_YEAST (Casein kinase II subunit alpha' OS=Saccharomyces cerevisiae GN=CKA2 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.897e-40
Identity = 83/160 (51.88%), Postives = 101/160 (63.12%), Query Frame = 1
Query:  259 SKARVYTDVNVLRPKEYWDYES-LTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            S ARVY +    RP+EYWDYE  +T+ WG   +YE++ K+GRGKYSEVF G  +  N++C                   L NL GGPNVV L DIV+D  SK P+LIFE + + DF+ LYPT    DI+YY  +LL ALDYCHS G MHRDVKP N MID
Sbjct:   17 SVARVYKNACEERPQEYWDYEQGVTIDWGKISNYEIINKIGRGKYSEVFSGRCIVNNQKCVIKVLKPVKMKKIYRELKILTNLTGGPNVVGLYDIVQDADSKIPALIFEEIKNVDFRTLYPTFKLPDIQYYFTQLLIALDYCHSMGIMHRDVKPQNVMID 176          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK21_YEAST (Casein kinase II subunit alpha OS=Saccharomyces cerevisiae GN=CKA1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.359e-38
Identity = 82/198 (41.41%), Postives = 111/198 (56.06%), Query Frame = 1
Query:  259 SKARVYTDVNVLRPKEYWDYESLTVQWG-DQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLC--------------------------------------GGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            S+ARVYT++N  R +EYWDYE+  + W  +  DYE+  KVGRGKYSEVF+G+ +++  +                    L +L                                       G  N++ L DI++D  SKTP+L+FEYV++ DF++LYP LTD +IR+Y++ELLKALDYCHS G MHRDVKPHN MID
Sbjct:    7 SEARVYTNINKQRTEEYWDYENTVIDWSTNTKDYEIENKVGRGKYSEVFQGVKLDSKVKIVIKMLKPVKKKKIKREIKILTDLSNEKVPPTTLPFQKDQYYTNQKEDVLKFIRPYIFDQPHNGHANIIHLFDIIKDPISKTPALVFEYVDNVDFRILYPKLTDLEIRFYMFELLKALDYCHSMGIMHRDVKPHNVMID 204          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK2A_ENCCU (Probable casein kinase II subunit alpha homolog OS=Encephalitozoon cuniculi GN=CKA1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 60/157 (38.22%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  265 ARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            AR   DVN  + + YW+YE  T+  G  + Y++ +++GRGKYSEVFEG      E+                    L+NL    N++KL+D+V D  S+  SLIFEY+   D+  ++  L   DI  Y  ++L AL YCHS G +HRD+KP N +I+
Sbjct:    7 ARSNADVNEKKDERYWNYECYTITTGSIEKYQIYQRMGRGKYSEVFEGRK--DREKIVIKALKPVRKAKICREVLILRNL-SHKNIIKLMDVVVDPESQIYSLIFEYIEHEDYAKIFEKLCYKDIVEYSRQILSALSYCHSMGIIHRDIKPQNMVIN 160          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: ERK2_DICDI (Extracellular signal-regulated kinase 2 OS=Dictyostelium discoideum GN=erkB PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 40/133 (30.08%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  355 YEVVRKVGRGKYSEVFEGINVNTNE-----RCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPT-LTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            YEV++K+G+G Y  V++ I+  T +     +                    LQ L G  N++KLL++++  + +   L+FE++ +    V+    L +   +Y IY+LLKAL Y HS   +HRD+KP N +++
Sbjct:   14 YEVLQKIGKGAYGIVWKAIDKKTKQTVALKKIFDAFQNATDAQRTFREIMFLQELHGHENIIKLLNVIKADNDRDIYLVFEHMETDLHAVIRAKILEEIHKQYTIYQLLKALKYMHSANVLHRDIKPSNLLLN 146          
The following BLAST results are available for this feature:
BLAST of FC920504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CSK22_CHICK2.552e-5359.64Casein kinase II subunit alpha' OS=Gallus gallus P... [more]
CSK2A_THEAN2.160e-5259.62Casein kinase II subunit alpha OS=Theileria annula... [more]
CSK2A_THEPA3.685e-5259.62Casein kinase II subunit alpha OS=Theileria parva ... [more]
Y6481_DICDI8.515e-4150.32Probable serine/threonine-protein kinase DDB_G0286... [more]
CSK22_YEAST1.897e-4051.88Casein kinase II subunit alpha' OS=Saccharomyces c... [more]
CSK21_YEAST1.359e-3841.41Casein kinase II subunit alpha OS=Saccharomyces ce... [more]
CSK2A_ENCCU3.251e-2438.22Probable casein kinase II subunit alpha homolog OS... [more]
ERK2_DICDI1.417e-1130.08Extracellular signal-regulated kinase 2 OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionC32009C07EF RVDevelop1 Citrus clementina cDNA clone C32009C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920504 ID=FC920504; Name=FC920504; organism=Citrus clementina; type=EST; length=736bp
GAAGCCAAACACAAACACCCAGCAGTACTTGCCGCACAGGTACAGGTACT
TCCCCTCCGCTTCTTGTTAGCGTGCGCCGTTCTTGCCTTGCGTGCGCCCA
TCGCGCACCATCCTATCCTGCGCACCCCCTGCCGAAGCTCCACATACAAT
CTTAACATCATCACAGATACTATCGCCGCTACTACCGTTGTCTACGAGGG
CGCTATCATCGATAAGATCGAGGAACGAAATCTCGCCGAGATCCCGCTGC
CGGCGATGTCGAAGGCTCGAGTTTATACCGACGTTAACGTTCTTCGGCCT
AAGGAATACTGGGATTACGAGTCGCTCACTGTTCAATGGGGTGATCAAGA
TGATTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAGTGAAGTTT
TTGAAGGCATAAATGTGAATACAAATGAGCGATGCATCATTAAGATCCTC
AAGCCTGTTAAGAAAAAGAAGATAAAGAGGGAGATAAAAATACTTCAGAA
CCTCTGTGGTGGTCCAAATGTTGTAAAGCTTCTTGATATTGTTAGAGATC
AGCACTCAAAAACTCCTAGCTTGATATTTGAGTATGTGAACAGCACTGAT
TTTAAAGTTTTGTACCCCACATTGACTGACTATGACATACGCTATTACAT
ATACGAGCTTCTGAAGGCATTAGATTACTGCCATTCACAGGGAAATATGC
ATAGAGATGTCAAGCCTCACAATGNTATGATAGACC
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