FC920508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1A_HUMAN (Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.202e-28 Identity = 64/163 (39.26%), Postives = 104/163 (63.80%), Query Frame = 3 Query: 129 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ 617 + LKFT+K L++ N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T M + K+MA + K+L+ +L+T +LQK+S MD FE+Q N++V ME +M+ +T+L+TP+ +V+SL+ Q+A++ GLEV L Q Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQ 167
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1A_DANRE (Charged multivesicular body protein 1a OS=Danio rerio GN=chmp1a PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.569e-28 Identity = 66/168 (39.29%), Postives = 103/168 (61.31%), Query Frame = 3 Query: 129 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHA 632 + LKFTSK L+R N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T M + K+M + K+L+ +L++ +LQK+S MD FE Q N++V ME +M+ +T+LSTP+ +V+ L+ Q+A++ GLEV L Q A A Sbjct: 5 LFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAGA 172
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1A_MOUSE (Charged multivesicular body protein 1a OS=Mus musculus GN=Chmp1a PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27 Identity = 62/163 (38.04%), Postives = 103/163 (63.19%), Query Frame = 3 Query: 129 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ 617 + LKFT+K L++ N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T M + K+MA + K+L+ +L+ +LQK+S MD FE+Q N++V ME +++ +T+L+TP+ +V+SL+ Q+A++ GLEV L Q Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQ 167
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1A_XENLA (Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26 Identity = 60/163 (36.81%), Postives = 103/163 (63.19%), Query Frame = 3 Query: 129 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ 617 + LKFT+K L++ N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T M + K+MA + K+L+ +L++ +LQK+S MD F++Q N++V ME +M+ + +L+TP+ +V++L+ Q+A++ GLEV L Q Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDNLIVQIAEENGLEVMDQLNQ 167
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: DID2_SCHPO (Vacuolar protein-sorting-associated protein 46 OS=Schizosaccharomyces pombe GN=did2 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.621e-25 Identity = 62/140 (44.29%), Postives = 94/140 (67.14%), Query Frame = 3 Query: 234 GNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLE----VSVGLPQPAAHAVPT 641 GN + ARIYA N+IRK+ E +N L+L+SR+DAV +RL T M ++ +MA +V+ ++ ++ T NL+ +S+ MD FE QF ++ VQ +M AM T++ TP+ +V+ LMQ VAD+ GLE ++ L PAA +VPT Sbjct: 21 GNSEIARIYASNAIRKQQESLNLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGVVRGMDRAMKTMNLEMISQVMDKFEAQFDDVNVQTGYMNKAMGSVTAVDTPQEDVDLLMQTVADEAGLEFNQNMNNNLSVPAA-SVPT 159
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: DID2_YEAST (Vacuolar protein-sorting-associated protein 46 OS=Saccharomyces cerevisiae GN=DID2 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20 Identity = 55/161 (34.16%), Postives = 88/161 (54.66%), Query Frame = 3 Query: 117 LLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEV 599 L N + LKFTSK LQ+Q N D +RIYA N+IRK+ E++ L+LASR+D+V +R+ T M ++ SM + K ++ +L NLQ+++ MD FE+QF +++ E S ++ +V+ LM +VAD+ G+E+ Sbjct: 9 LENTLFQLKFTSKQLQKQANKASKEEKQETNKLKRALNE-NEDISRIYASNAIRKKNERLQLLKLASRVDSVASRVQTAVTMRQVSASMGQVCKGMDKALQNMNLQQITMIMDKFEQQFEDLDTSVNVYEDMGVNSDAMLVDNDKVDELMSKVADENGMEL 168 The following BLAST results are available for this feature:
BLAST of FC920508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920508 ID=FC920508; Name=FC920508; organism=Citrus clementina; type=EST; length=711bpback to top |