FC920508

Overview
NameFC920508
Unique NameFC920508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2368 contig Ccv1_Contig2368:27..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1A_HUMAN (Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.202e-28
Identity = 64/163 (39.26%), Postives = 104/163 (63.80%), Query Frame = 3
Query:  129 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ 617
            +  LKFT+K L++                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+MA + K+L+ +L+T +LQK+S  MD FE+Q  N++V    ME +M+ +T+L+TP+ +V+SL+ Q+A++ GLEV   L Q
Sbjct:    5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQ 167          
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1A_DANRE (Charged multivesicular body protein 1a OS=Danio rerio GN=chmp1a PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.569e-28
Identity = 66/168 (39.29%), Postives = 103/168 (61.31%), Query Frame = 3
Query:  129 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHA 632
            +  LKFTSK L+R                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+M  + K+L+ +L++ +LQK+S  MD FE Q  N++V    ME +M+ +T+LSTP+ +V+ L+ Q+A++ GLEV   L Q  A A
Sbjct:    5 LFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAGA 172          
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1A_MOUSE (Charged multivesicular body protein 1a OS=Mus musculus GN=Chmp1a PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 62/163 (38.04%), Postives = 103/163 (63.19%), Query Frame = 3
Query:  129 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ 617
            +  LKFT+K L++                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+MA + K+L+ +L+  +LQK+S  MD FE+Q  N++V    ME +++ +T+L+TP+ +V+SL+ Q+A++ GLEV   L Q
Sbjct:    5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQ 167          
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1A_XENLA (Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 60/163 (36.81%), Postives = 103/163 (63.19%), Query Frame = 3
Query:  129 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ 617
            +  LKFT+K L++                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+MA + K+L+ +L++ +LQK+S  MD F++Q  N++V    ME +M+ + +L+TP+ +V++L+ Q+A++ GLEV   L Q
Sbjct:    5 LFQLKFTAKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDNLIVQIAEENGLEVMDQLNQ 167          
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: DID2_SCHPO (Vacuolar protein-sorting-associated protein 46 OS=Schizosaccharomyces pombe GN=did2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.621e-25
Identity = 62/140 (44.29%), Postives = 94/140 (67.14%), Query Frame = 3
Query:  234 GNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLE----VSVGLPQPAAHAVPT 641
            GN + ARIYA N+IRK+ E +N L+L+SR+DAV +RL T   M  ++ +MA +V+ ++ ++ T NL+ +S+ MD FE QF ++ VQ  +M  AM   T++ TP+ +V+ LMQ VAD+ GLE    ++  L  PAA +VPT
Sbjct:   21 GNSEIARIYASNAIRKQQESLNLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGVVRGMDRAMKTMNLEMISQVMDKFEAQFDDVNVQTGYMNKAMGSVTAVDTPQEDVDLLMQTVADEAGLEFNQNMNNNLSVPAA-SVPT 159          
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: DID2_YEAST (Vacuolar protein-sorting-associated protein 46 OS=Saccharomyces cerevisiae GN=DID2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 55/161 (34.16%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  117 LLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEV 599
            L N +  LKFTSK LQ+Q                      N D +RIYA N+IRK+ E++  L+LASR+D+V +R+ T   M  ++ SM  + K ++ +L   NLQ+++  MD FE+QF +++      E     S ++     +V+ LM +VAD+ G+E+
Sbjct:    9 LENTLFQLKFTSKQLQKQANKASKEEKQETNKLKRALNE-NEDISRIYASNAIRKKNERLQLLKLASRVDSVASRVQTAVTMRQVSASMGQVCKGMDKALQNMNLQQITMIMDKFEQQFEDLDTSVNVYEDMGVNSDAMLVDNDKVDELMSKVADENGMEL 168          
The following BLAST results are available for this feature:
BLAST of FC920508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CHM1A_HUMAN1.202e-2839.26Charged multivesicular body protein 1a OS=Homo sap... [more]
CHM1A_DANRE4.569e-2839.29Charged multivesicular body protein 1a OS=Danio re... [more]
CHM1A_MOUSE2.962e-2738.04Charged multivesicular body protein 1a OS=Mus musc... [more]
CHM1A_XENLA1.125e-2636.81Charged multivesicular body protein 1a OS=Xenopus ... [more]
DID2_SCHPO3.621e-2544.29Vacuolar protein-sorting-associated protein 46 OS=... [more]
DID2_YEAST2.056e-2034.16Vacuolar protein-sorting-associated protein 46 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32009D01EF RVDevelop1 Citrus clementina cDNA clone C32009D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920508 ID=FC920508; Name=FC920508; organism=Citrus clementina; type=EST; length=711bp
AAGAAGTATCTCAATAACCACAAAGTCGTCTTCGATCAAAATCCCCAATT
CTTTGAAACCCTTGCTTGATTCAATTCTCAGATCCGAAACATTTCGCGAT
GGGAAACACGGAGAAGCTGTTGAATCAGATCATGGACTTGAAATTCACCT
CAAAATCTCTTCAACGCCAGGCGAGAAAATGCGAGAAGGAAGAGAAAGCC
GAGAAATTGAAGGTGAAAAAGGCCATCGAGAAAGGCAACATGGACGGCGC
CAGAATCTACGCCGAGAACTCCATCCGCAAGCGCACCGAACAGATGAATT
ATCTCCGCCTCGCTTCTCGTCTCGACGCCGTCGTGGCTCGTCTCGACACC
CAGGCCAAAATGACCACCATTAATAAGTCCATGGCTAACATCGTCAAGTC
CCTTGAATCCTCTCTCGCTACCGGTAATTTGCAGAAGATGTCAGAGACTA
TGGACTCATTTGAGAAGCAGTTTGTGAACATGGAGGTTCAAGCAGAGTTC
ATGGAGAGTGCTATGGCAGGGTCAACCTCATTATCCACGCCAGAAGGGGA
GGTCAACAGTTTGATGCAACAGGTTGCTGATGATTATGGACTGGAGGTTT
CAGTTGGGCTCCCACAACCGGCTGCACATGCTGTGCCAACCAAGCACAAG
AGAAAGTTGATGAGGACGATTTATCAAGGCGTCTTGCCCGAGCTCAGGCT
AGAGGNTAATC
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