FC920510 | Citrus Genome Database

Overview


Name	FC920510
Unique Name	FC920510
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	754

Libraries


Library Name	Type
RVDevelop1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig14154	contig	Ccv1_Contig14154:1..755.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSAB_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit B, mitochondrial OS=Xenopus laevis GN=sdha-B PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.320e-64
Identity = 105/179 (58.66%), Postives = 122/179 (68.16%), Query Frame = 2

Query:  152 RCVSRGLGLSSYRSKRSVSNDSLRSHF----------SRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            R +SR L L+S     + ++ + R +F          S   S + +  Y +VDH +D                LSE GFNTACITKLFPTRSHTVAAQGGINAALGNM +DDWRWH YDTVKGSDWLGDQDAI YM  +AP +VIELENYG+PFSRTE GKIYQRAFGGQSL +GK G+
Sbjct:   10 RLLSRALQLTSTLQNCTATSIAARRNFHFTVYGRKDTSAKVSDSISTQYPVVDHDFDAVVVGAGGAGLRAAFGLSEAGFNTACITKLFPTRSHTVAAQGGINAALGNMEDDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVIELENYGMPFSRTEQGKIYQRAFGGQSLKYGKGGQ 188

HSP 2 Score: 61.6178 bits (148), Expect = 5.320e-64
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 1

Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            + KGGQA+RC C ADRTGH+LLHTLYG++++++T  FV
Sbjct:  183 YGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 220

[Close]

BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_MOUSE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Mus musculus GN=Sdha PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.320e-64
Identity = 95/131 (72.52%), Postives = 104/131 (79.39%), Query Frame = 2

Query:  266 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM  +AP +V+ELENYG+PFSRTEDGKIYQRAFGGQSL FGK G+
Sbjct:   55 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACLTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQ 185

HSP 2 Score: 62.7734 bits (151), Expect = 5.320e-64
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1

Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F KGGQA+RC C ADRTGH+LLHTLYG++++++T  FV
Sbjct:  180 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 217

[Close]

BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_CHICK (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Gallus gallus GN=SDHA PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 6.937e-64
Identity = 95/131 (72.52%), Postives = 104/131 (79.39%), Query Frame = 2

Query:  266 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM +D+WRWH YDTVKGSDWLGDQDAI YM  +AP AVIELENYG+PFSRTE+GKIYQRAFGGQSL FGK G+
Sbjct:   56 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQ 186

HSP 2 Score: 62.7734 bits (151), Expect = 6.937e-64
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1

Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F KGGQA+RC C ADRTGH+LLHTLYG++++++T  FV
Sbjct:  181 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 218

[Close]

BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_RAT (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Rattus norvegicus GN=Sdha PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.180e-63
Identity = 94/131 (71.76%), Postives = 104/131 (79.39%), Query Frame = 2

Query:  266 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM  +AP +V+ELENYG+PFSRTEDG+IYQRAFGGQSL FGK G+
Sbjct:   47 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACLTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGRIYQRAFGGQSLKFGKGGQ 177

HSP 2 Score: 62.7734 bits (151), Expect = 1.180e-63
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1

Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F KGGQA+RC C ADRTGH+LLHTLYG++++++T  FV
Sbjct:  172 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 209

[Close]

BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSAA_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit A, mitochondrial OS=Xenopus laevis GN=sdha-A PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.005e-63
Identity = 105/179 (58.66%), Postives = 121/179 (67.60%), Query Frame = 2

Query:  152 RCVSRGLGLSSYRSKRSVSNDSLRSHF----------SRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            R +SR L L+S     + +  + R +F          S   S + +  Y +VDH +D                LSE GFNTACITKLFPTRSHTVAAQGGINAALGNM +DDWRWH YDTVKGSDWLGDQDAI YM  +AP +VIELENYG+PFSRTE GKIYQRAFGGQSL +GK G+
Sbjct:   10 RLLSRALQLASRVQNCTPTVTTARRNFHFTVYGRKDTSAKVSDSISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACITKLFPTRSHTVAAQGGINAALGNMEDDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVIELENYGMPFSRTEQGKIYQRAFGGQSLKYGKGGQ 188

HSP 2 Score: 61.6178 bits (148), Expect = 2.005e-63
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 1

Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            + KGGQA+RC C ADRTGH+LLHTLYG++++++T  FV
Sbjct:  183 YGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 220

[Close]

BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_DICDI (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Dictyostelium discoideum GN=sdhA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.799e-63
Identity = 94/144 (65.28%), Postives = 107/144 (74.31%), Query Frame = 2

Query:  236 RLFSTNSTG-GYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGRRT 664
            R FST +    Y +VDHTYD                L+E G+ TACITKLFPTRSHTVAAQGGINAALGN  +DDWRWH YDTVKGSD+LGDQDAI YMC+EA   V+ELE YG+PFSR +DG+IYQRAFGGQS +FGK G+ T
Sbjct:   22 RSFSTQTQSRDYAVVDHTYDAIVVGAGGAGLRAALGLTEKGYKTACITKLFPTRSHTVAAQGGINAALGNADQDDWRWHAYDTVKGSDFLGDQDAIHYMCKEAVPTVLELEQYGVPFSRMDDGRIYQRAFGGQSKNFGKGGQAT 165

HSP 2 Score: 68.1662 bits (165), Expect = 5.799e-63
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1

Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F KGGQA RC  AADRTGHALLHTLYGQA+KHNT+ F+
Sbjct:  158 FGKGGQATRCCAAADRTGHALLHTLYGQAVKHNTKFFI 195

[Close]

BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_DROME (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Drosophila melanogaster GN=Scs-fp PE=2 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 9.856e-63
Identity = 97/131 (74.05%), Postives = 103/131 (78.63%), Query Frame = 2

Query:  266 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            Y +VDH YD                L   GF TA ITKLFPTRSHT+AAQGGINAALGNM EDDW+WHMYDTVKGSDWLGDQDAI YM REAPKAVIELENYG+PFSRT+DGKIYQRAFGGQSL FGK G+
Sbjct:   52 YPVVDHAYDAIVVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAAQGGINAALGNMEEDDWKWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTQDGKIYQRAFGGQSLKFGKGGQ 182

HSP 2 Score: 57.7658 bits (138), Expect = 9.856e-63
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1

Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F KGGQA+RC   ADRTGH+LLHTLYGQ++ ++   FV
Sbjct:  177 FGKGGQAHRCCAVADRTGHSLLHTLYGQSLSYDCNYFV 214

[Close]

BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSX_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Saccharomyces cerevisiae GN=YJL045W PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 4.845e-62
Identity = 98/160 (61.25%), Postives = 116/160 (72.50%), Query Frame = 2

Query:  182 SYRSKRSVSNDSLRSHFSRLFSTNSTGG-YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            SY  +R+ ++ S+      + S +     Y I+DH YD                L+E G+ TAC++KLFPTRSHTVAAQGGINAALGNM  DDW+ HMYDTVKGSDWLGDQDAI YM REAPK+VIELE+YG+PFSRTEDG+IYQRAFGGQS DFGK G+
Sbjct:   11 SYILQRTFTSSSVVRQIGEVKSESKPPAKYHIIDHEYDCVVVGAGGAGLRAAFGLAEAGYKTACLSKLFPTRSHTVAAQGGINAALGNMHPDDWKSHMYDTVKGSDWLGDQDAIHYMTREAPKSVIELEHYGMPFSRTEDGRIYQRAFGGQSKDFGKGGQ 170

HSP 2 Score: 62.7734 bits (151), Expect = 4.845e-62
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1

Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F KGGQAYR    ADRTGHA+LHTLYGQA+K+NT  F+
Sbjct:  165 FGKGGQAYRTCAVADRTGHAMLHTLYGQALKNNTHFFI 202

[Close]

BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Saccharomyces cerevisiae GN=SDH1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 6.880e-61
Identity = 90/135 (66.67%), Postives = 108/135 (80.00%), Query Frame = 2

Query:  245 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGK 649
            S ++ G Y I+DH YD                L+E G+ TACI+KLFPTRSHTVAAQGGINAALGNM +D+W+WHMYDTVKGSDWLGDQD+I YM REAPK++IELE+YG+PFSRTE+GKIYQRAFGGQ+ ++GK
Sbjct:   39 SRSADGKYHIIDHEYDCVVIGAGGAGLRAAFGLAEAGYKTACISKLFPTRSHTVAAQGGINAALGNMHKDNWKWHMYDTVKGSDWLGDQDSIHYMTREAPKSIIELEHYGVPFSRTENGKIYQRAFGGQTKEYGK 173

HSP 2 Score: 59.6918 bits (143), Expect = 6.880e-61
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1

Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            + KG QAYR    ADRTGHALLHTLYGQA++H+T  F+
Sbjct:  171 YGKGAQAYRTCAVADRTGHALLHTLYGQALRHDTHFFI 208

[Close]

BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_CAEEL (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Caenorhabditis elegans GN=sdha-1 PE=2 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 2.822e-59
Identity = 102/168 (60.71%), Postives = 115/168 (68.45%), Query Frame = 2

Query:  173 GLSSYRSKRSVS------NDSLRSHFSRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658
            GL +  + RSVS      +D+ RS  ++         Y +VDH YD                L+E G  TA ITKLFPTRSHTVAAQGGINAALGNM  D+WRWH YDTVKGSDWLGDQDAI YM REA +AVIELENYG+PFSRT DGKIYQRAFGGQS DFG+ G+
Sbjct:    8 GLRNTVAARSVSLSAANHSDAKRSDIAQ---------YKVVDHAYDAVVVGAGGAGLRAAMGLAEGGLKTAVITKLFPTRSHTVAAQGGINAALGNMNPDNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAVIELENYGMPFSRTTDGKIYQRAFGGQSNDFGRGGQ 166

HSP 2 Score: 56.225 bits (134), Expect = 2.822e-59
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1

Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F +GGQA+R  C ADRTGH+LLHTLYG ++++N   FV
Sbjct:  161 FGRGGQAHRTCCVADRTGHSLLHTLYGASLQYNCNYFV 198

The following BLAST results are available for this feature:

BLAST of FC920510 vs. ExPASy Swiss-Prot

BLAST of FC920510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40


Match Name	E-value	Identity	Description
DHSAB_XENLA	5.320e-64	58.66	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
DHSA_MOUSE	5.320e-64	72.52	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
DHSA_CHICK	6.937e-64	72.52	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
DHSA_RAT	1.180e-63	71.76	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
DHSAA_XENLA	2.005e-63	58.66	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
DHSA_DICDI	5.799e-63	65.28	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
DHSA_DROME	9.856e-63	74.05	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
DHSX_YEAST	4.845e-62	61.25	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
DHSA_YEAST	6.880e-61	66.67	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
DHSA_CAEEL	2.822e-59	60.71	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]

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Properties


Property Name	Value
Genbank description	C32009D04EF RVDevelop1 Citrus clementina cDNA clone C32009D04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC920510 ID=FC920510; Name=FC920510; organism=Citrus clementina; type=EST; length=754bp
GGTCCGAGCATTCGAGTCAGGTTCCCATCTCTCGTCTCCCCGCTGCCGGT
CCTCCATAGCCTGTCTGTCATTGTAGCAGCCTTTGCGATCTATCGAGTAA
TAACTAATTAGCAAGAGATTGGGAGAGTAAAACACAGATACCGAGATGTG
GCGCTGCGTTTCTCGTGGCCTTGGCTTATCTTCTTATCGTTCAAAACGAT
CAGTCTCCAATGACTCTCTCAGATCTCATTTCTCCAGATTGTTCTCCACC
AATTCCACTGGAGGATACACAATAGTGGATCATACATATGACGCTGTAGT
GGTTGGAGCTGGCGGTGCTGGGCTGAGAGCAGCGATTGGGCTTTCAGAGC
ATGGCTTCAACACCGCTTGCATTACCAAGCTCTTCCCTACTCGTTCTCAC
ACTGTTGCGGCTCAGGGTGGTATTAATGCTGCTTTAGGAAACATGACTGA
AGATGACTGGAGGTGGCACATGTATGACACAGTCAAGGGAAGTGATTGGT
TAGGTGATCAGGATGCTATTCAATATATGTGTAGGGAGGCACCAAAAGCA
GTGATTGAGCTGGAGAATTACGGGTTACCATTTTCTCGGACAGAAGATGG
AAAAATATACCAGCGTGCATTTGGCGGTCAAAGTCTTGATTTTGGAAAGG
TGGGCAGGCGTACCGTTGTGCATGTGCTGCTGACAGAACTGGTCATGCTC
TATTGCATACCCTCTATGGCCAGGCTATGAAACATAATACACAGNTCTTT
GTGG