FC920510

Overview
NameFC920510
Unique NameFC920510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14154 contig Ccv1_Contig14154:1..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_RICTY (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia typhi GN=sdhA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.566e-57
Identity = 86/131 (65.65%), Postives = 102/131 (77.86%), Query Frame = 2
Query:  257 TGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGK 649
            T  Y I+ H +D                +++ G NTACITK+FPTRSHTVAAQGGI+AALGNM EDDWRWHMYDTVKGSDWLGDQDAI+YMC+ AP A++ELE+YG+PFSRTEDGKIYQR FGG + ++GK
Sbjct:    2 TKAYNIIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACITKIFPTRSHTVAAQGGISAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTEDGKIYQRPFGGMTTEYGK 132          

HSP 2 Score: 50.8322 bits (120), Expect = 2.566e-57
Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 1
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            + KG  A R   AADRTGHA+LHTLY Q++KH  Q F+
Sbjct:  130 YGKGKAAQRTCAAADRTGHAILHTLYQQSLKHKVQFFI 167          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_RICFE (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia felis GN=sdhA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.345e-57
Identity = 86/131 (65.65%), Postives = 102/131 (77.86%), Query Frame = 2
Query:  257 TGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGK 649
            T  Y I+ H +D                +++ G NTACITKLFPTRSHTVAAQGGI+AALGNM EDDWRWHMYDTVKGSDWLGDQDAI+YMC+ AP A++ELE+YG+PFSRTE+GKIYQR FGG + ++GK
Sbjct:    2 TKAYNIIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACITKLFPTRSHTVAAQGGISAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTEEGKIYQRPFGGMTTEYGK 132          

HSP 2 Score: 51.2174 bits (121), Expect = 3.345e-57
Identity = 23/38 (60.53%), Postives = 27/38 (71.05%), Query Frame = 1
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            + KG  A R   AADRTGHA+LHTLY Q++KH  Q FV
Sbjct:  130 YGKGKAAQRTCAAADRTGHAILHTLYQQSLKHKVQFFV 167          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_RICCN (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia conorii GN=sdhA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.345e-57
Identity = 86/131 (65.65%), Postives = 102/131 (77.86%), Query Frame = 2
Query:  257 TGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGK 649
            T  Y I+ H +D                +++ G NTACITKLFPTRSHTVAAQGGI+AALGNM EDDWRWHMYDTVKGSDWLGDQDAI+YMC+ AP A++ELE+YG+PFSRTE+GKIYQR FGG + ++GK
Sbjct:    2 TKAYNIIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACITKLFPTRSHTVAAQGGISAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTEEGKIYQRPFGGMTTEYGK 132          

HSP 2 Score: 51.2174 bits (121), Expect = 3.345e-57
Identity = 23/38 (60.53%), Postives = 27/38 (71.05%), Query Frame = 1
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            + KG  A R   AADRTGHA+LHTLY Q++KH  Q FV
Sbjct:  130 YGKGKAAQRTCAAADRTGHAILHTLYQQSLKHKVQFFV 167          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_RICPR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia prowazekii GN=sdhA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.643e-56
Identity = 85/131 (64.89%), Postives = 101/131 (77.10%), Query Frame = 2
Query:  257 TGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGK 649
            T  Y I+ H +D                +++ G NTACITK+FPTRSHTVAAQGGI+AALGNM EDDWRWHMYDTVKGSDWLGDQDAI+YMC+ AP A++ELE+YG+PFSRT DGKIYQR FGG + ++GK
Sbjct:    2 TKAYNIIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACITKIFPTRSHTVAAQGGISAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTVDGKIYQRPFGGMTTEYGK 132          

HSP 2 Score: 50.8322 bits (120), Expect = 1.643e-56
Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 1
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            + KG  A R   AADRTGHA+LHTLY Q++KH  Q F+
Sbjct:  130 YGKGKAAQRTCAAADRTGHAILHTLYQQSLKHKVQFFI 167          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_RICBR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.141e-56
Identity = 85/131 (64.89%), Postives = 101/131 (77.10%), Query Frame = 2
Query:  257 TGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGK 649
            T  Y I+ H +D                ++E G NTACI+KLFPTRSHTVAAQGGI+AALGNM  DDWRWHMYDTVKGSDWLGDQDAI+YMC+ AP A++ELE+YG+PFSRTE+GKIYQR FGG + ++GK
Sbjct:    2 TKSYNIIHHKFDVIVVGAGGAGLRAAFGMAEEGLNTACISKLFPTRSHTVAAQGGISAALGNMGADDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTEEGKIYQRPFGGMTTEYGK 132          

HSP 2 Score: 50.8322 bits (120), Expect = 2.141e-56
Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 1
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            + KG  A R   AADRTGHA+LHTLY Q++KH  Q F+
Sbjct:  130 YGKGKAAQRTCAAADRTGHAILHTLYQQSLKHKVQFFI 167          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_PARDE (Succinate dehydrogenase flavoprotein subunit OS=Paracoccus denitrificans GN=sdhA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.603e-50
Identity = 78/128 (60.94%), Postives = 94/128 (73.44%), Query Frame = 2
Query:  266 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGK 649
            Y    H YD                ++E G  TAC+TK+FPTRSHTVAAQGGI A+L NM  D+W+WHMYDTVKGSDWLGD DA++Y+ REAPKAV ELE+YG+PFSRTE+GKIYQR FGG + +FG+
Sbjct:    4 YKYETHEYDVVVVGAGGAGLRATLGMAEQGLRTACVTKVFPTRSHTVAAQGGIAASLSNMGPDNWQWHMYDTVKGSDWLGDTDAMEYLAREAPKAVYELEHYGVPFSRTEEGKIYQRPFGGHTTEFGE 131          

HSP 2 Score: 47.7506 bits (112), Expect = 4.603e-50
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 1
Query:  640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753
            F +G    R   AADRTGHA+LHTLYGQ++K   + F+
Sbjct:  129 FGEGPPVQRTCAAADRTGHAILHTLYGQSLKEKAEFFI 166          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_SALTY (Succinate dehydrogenase flavoprotein subunit OS=Salmonella typhimurium GN=sdhA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.400e-45
Identity = 68/102 (66.67%), Postives = 86/102 (84.31%), Query Frame = 2
Query:  341 LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFG 646
            +S+ G   A ++K+FPTRSHTV+AQGGI  ALGN  ED+W WHMYDTVKGSD++GDQDAI+YMC+  P+A++ELE+ GLPFSR +DG+IYQR FGGQS +FG
Sbjct:   26 ISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFG 127          

HSP 2 Score: 47.7506 bits (112), Expect = 2.400e-45
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1
Query:  649 GGQAYRCACAADRTGHALLHTLYGQAMKHNTQXF 750
            G QA R A AADRTGHALLHTLY Q +K++T  F
Sbjct:  128 GEQAARTAAAADRTGHALLHTLYQQNLKNHTTIF 161          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_ECOLI (Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli (strain K12) GN=sdhA PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.400e-45
Identity = 68/102 (66.67%), Postives = 86/102 (84.31%), Query Frame = 2
Query:  341 LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFG 646
            +S+ G   A ++K+FPTRSHTV+AQGGI  ALGN  ED+W WHMYDTVKGSD++GDQDAI+YMC+  P+A++ELE+ GLPFSR +DG+IYQR FGGQS +FG
Sbjct:   26 ISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFG 127          

HSP 2 Score: 47.7506 bits (112), Expect = 2.400e-45
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1
Query:  649 GGQAYRCACAADRTGHALLHTLYGQAMKHNTQXF 750
            G QA R A AADRTGHALLHTLY Q +K++T  F
Sbjct:  128 GEQAARTAAAADRTGHALLHTLYQQNLKNHTTIF 161          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_ECOL6 (Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli O6 GN=sdhA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.400e-45
Identity = 68/102 (66.67%), Postives = 86/102 (84.31%), Query Frame = 2
Query:  341 LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFG 646
            +S+ G   A ++K+FPTRSHTV+AQGGI  ALGN  ED+W WHMYDTVKGSD++GDQDAI+YMC+  P+A++ELE+ GLPFSR +DG+IYQR FGGQS +FG
Sbjct:   26 ISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFG 127          

HSP 2 Score: 47.7506 bits (112), Expect = 2.400e-45
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1
Query:  649 GGQAYRCACAADRTGHALLHTLYGQAMKHNTQXF 750
            G QA R A AADRTGHALLHTLY Q +K++T  F
Sbjct:  128 GEQAARTAAAADRTGHALLHTLYQQNLKNHTTIF 161          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_ECO57 (Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli O157:H7 GN=sdhA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.400e-45
Identity = 68/102 (66.67%), Postives = 86/102 (84.31%), Query Frame = 2
Query:  341 LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFG 646
            +S+ G   A ++K+FPTRSHTV+AQGGI  ALGN  ED+W WHMYDTVKGSD++GDQDAI+YMC+  P+A++ELE+ GLPFSR +DG+IYQR FGGQS +FG
Sbjct:   26 ISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFG 127          

HSP 2 Score: 47.7506 bits (112), Expect = 2.400e-45
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1
Query:  649 GGQAYRCACAADRTGHALLHTLYGQAMKHNTQXF 750
            G QA R A AADRTGHALLHTLY Q +K++T  F
Sbjct:  128 GEQAARTAAAADRTGHALLHTLYQQNLKNHTTIF 161          
The following BLAST results are available for this feature:
BLAST of FC920510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
DHSA_RICTY2.566e-5765.65Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICFE3.345e-5765.65Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICCN3.345e-5765.65Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICPR1.643e-5664.89Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICBR2.141e-5664.89Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_PARDE4.603e-5060.94Succinate dehydrogenase flavoprotein subunit OS=Pa... [more]
DHSA_SALTY2.400e-4566.67Succinate dehydrogenase flavoprotein subunit OS=Sa... [more]
DHSA_ECOLI2.400e-4566.67Succinate dehydrogenase flavoprotein subunit OS=Es... [more]
DHSA_ECOL62.400e-4566.67Succinate dehydrogenase flavoprotein subunit OS=Es... [more]
DHSA_ECO572.400e-4566.67Succinate dehydrogenase flavoprotein subunit OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionC32009D04EF RVDevelop1 Citrus clementina cDNA clone C32009D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920510 ID=FC920510; Name=FC920510; organism=Citrus clementina; type=EST; length=754bp
GGTCCGAGCATTCGAGTCAGGTTCCCATCTCTCGTCTCCCCGCTGCCGGT
CCTCCATAGCCTGTCTGTCATTGTAGCAGCCTTTGCGATCTATCGAGTAA
TAACTAATTAGCAAGAGATTGGGAGAGTAAAACACAGATACCGAGATGTG
GCGCTGCGTTTCTCGTGGCCTTGGCTTATCTTCTTATCGTTCAAAACGAT
CAGTCTCCAATGACTCTCTCAGATCTCATTTCTCCAGATTGTTCTCCACC
AATTCCACTGGAGGATACACAATAGTGGATCATACATATGACGCTGTAGT
GGTTGGAGCTGGCGGTGCTGGGCTGAGAGCAGCGATTGGGCTTTCAGAGC
ATGGCTTCAACACCGCTTGCATTACCAAGCTCTTCCCTACTCGTTCTCAC
ACTGTTGCGGCTCAGGGTGGTATTAATGCTGCTTTAGGAAACATGACTGA
AGATGACTGGAGGTGGCACATGTATGACACAGTCAAGGGAAGTGATTGGT
TAGGTGATCAGGATGCTATTCAATATATGTGTAGGGAGGCACCAAAAGCA
GTGATTGAGCTGGAGAATTACGGGTTACCATTTTCTCGGACAGAAGATGG
AAAAATATACCAGCGTGCATTTGGCGGTCAAAGTCTTGATTTTGGAAAGG
TGGGCAGGCGTACCGTTGTGCATGTGCTGCTGACAGAACTGGTCATGCTC
TATTGCATACCCTCTATGGCCAGGCTATGAAACATAATACACAGNTCTTT
GTGG
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