FC920510

Overview
NameFC920510
Unique NameFC920510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14154 contig Ccv1_Contig14154:1..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_COXBU (Succinate dehydrogenase flavoprotein subunit OS=Coxiella burnetii GN=sdhA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.801e-37
Identity = 75/119 (63.03%), Postives = 92/119 (77.31%), Query Frame = 2
Query:  356 FNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGK-VGRRTVVHVLLTELVMLYCI 709
            +  A ++K+FPTRSHTV+AQGGI AALGN+  D   WHM+DTVKGSD+LGDQDAIQYMC +AP +V ELE+YGLPFSR +DG+IYQRAFGG + DFGK + RRT      T   ML+ +
Sbjct:   33 YKVAVVSKVFPTRSHTVSAQGGIAAALGNVVPDKPIWHMFDTVKGSDYLGDQDAIQYMCEQAPPSVYELEHYGLPFSRLDDGRIYQRAFGGHTRDFGKEMARRTCACADRTGHAMLHTL 151          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: FRDA_MYCTU (Fumarate reductase flavoprotein subunit OS=Mycobacterium tuberculosis GN=frdA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.161e-19
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  359 NTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGG 628
            + A ++K++P RSHTV+A+GG  A  G+  +D    H +DTV G DWL DQDA++    EAPK +++LE++G P+SR  DG++  R FGG
Sbjct:   31 DVAIVSKVYPMRSHTVSAEGGAAAVTGD--DDSLDEHAHDTVSGGDWLCDQDAVEAFVAEAPKELVQLEHWGCPWSRKPDGRVAVRPFGG 118          

HSP 2 Score: 25.7942 bits (55), Expect = 1.161e-19
Identity = 12/30 (40.00%), Postives = 19/30 (63.33%), Query Frame = 1
Query:  649 GGQAYRCACAADRTGHALLHTLYGQAMKHN 738
            G +  R   AAD+TG  LLHTL+ + + ++
Sbjct:  118 GMKKLRTWFAADKTGFHLLHTLFQRLLTYS 147          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: FRDA_MYCBO (Fumarate reductase flavoprotein subunit OS=Mycobacterium bovis GN=frdA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.161e-19
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  359 NTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGG 628
            + A ++K++P RSHTV+A+GG  A  G+  +D    H +DTV G DWL DQDA++    EAPK +++LE++G P+SR  DG++  R FGG
Sbjct:   31 DVAIVSKVYPMRSHTVSAEGGAAAVTGD--DDSLDEHAHDTVSGGDWLCDQDAVEAFVAEAPKELVQLEHWGCPWSRKPDGRVAVRPFGG 118          

HSP 2 Score: 25.7942 bits (55), Expect = 1.161e-19
Identity = 12/30 (40.00%), Postives = 19/30 (63.33%), Query Frame = 1
Query:  649 GGQAYRCACAADRTGHALLHTLYGQAMKHN 738
            G +  R   AAD+TG  LLHTL+ + + ++
Sbjct:  118 GMKKLRTWFAADKTGFHLLHTLFQRLLTYS 147          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: FRDA_PROVU (Fumarate reductase flavoprotein subunit OS=Proteus vulgaris GN=frdA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.527e-18
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  365 ACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLD 640
            A I+K++P RSHTVAA+GG  +A      D + +H  DTV G DWL +QD + Y     P  + +LE +G P+SR EDG +  R FGG  ++
Sbjct:   34 ALISKVYPMRSHTVAAEGG--SAAVTQAHDSYDFHFNDTVSGGDWLCEQDVVDYFVEHCPTEMTQLELWGCPWSRKEDGSVNVRRFGGMKIE 123          

HSP 2 Score: 26.5646 bits (57), Expect = 3.527e-18
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  676 AADRTGHALLHTLYGQAMKH 735
            AAD+TG  +LHTL+  ++K+
Sbjct:  128 AADKTGFHMLHTLFQTSLKY 147          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: FRDA_HAEIN (Fumarate reductase flavoprotein subunit OS=Haemophilus influenzae GN=frdA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.214e-17
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  365 ACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLD 640
            A ++K++P R+HTVAA+GG  A +    ED +  H  DTV G DWL +QD ++Y  + +P  + +LE +G P+SR  DG +  R FGG  ++
Sbjct:   34 ALVSKVYPMRTHTVAAEGGAAAVIKE--EDSYDKHFQDTVAGGDWLCEQDVVEYFVQHSPVEMTQLERWGCPWSRKADGDVNVRRFGGMKIE 123          

HSP 2 Score: 25.409 bits (54), Expect = 2.214e-17
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  676 AADRTGHALLHTLYGQAMKH 735
            AAD+TG  LLHTL+  ++++
Sbjct:  128 AADKTGFHLLHTLFQTSIQY 147          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: FRDA_ECOLI (Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.864e-17
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  365 ACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLD 640
            A I+K++P RSHTVAA+GG  A   +   D + +H +DTV G DWL +QD + Y     P  + +LE +G P+SR  DG +  R FGG  ++
Sbjct:   34 ALISKVYPMRSHTVAAEGGSAAVAQD--HDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIE 123          

HSP 2 Score: 24.2534 bits (51), Expect = 4.864e-17
Identity = 9/19 (47.37%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  676 AADRTGHALLHTLYGQAMK 732
            AAD+TG  +LHTL+  +++
Sbjct:  128 AADKTGFHMLHTLFQTSLQ 146          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: Y033_METJA (Uncharacterized FAD-dependent oxidoreductase MJ0033 OS=Methanocaldococcus jannaschii GN=MJ0033 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  380 LFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLD 640
            LF     TV A+GG NA      +D ++ H YDTVKG  ++ +   ++ + + APK ++ LE +G  F RTEDG I QR FGGQS +
Sbjct:   33 LFGKSGCTVMAEGGYNAVFN--PKDSFKKHFYDTVKGGGFINNPKLVEILVKNAPKELLNLERFGALFDRTEDGFIAQRPFGGQSFN 117          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_BACSU (Succinate dehydrogenase flavoprotein subunit OS=Bacillus subtilis GN=sdhA PE=3 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 2
Query:  392 RSHTVAAQGGINAALGNMTEDDWRW-HMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGG 628
            RSH+V AQGGIN A+    E D  W H  DTV G D+L +Q  ++ MC  AP  +  L+  G+ F+RT +G +  R FGG
Sbjct:   39 RSHSVCAQGGINGAVNTKGEGDSPWEHFDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGG 118          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: FRDA_HELPY (Fumarate reductase flavoprotein subunit OS=Helicobacter pylori GN=frdA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  347 EHGFNTACITKLFPTRSHTVAAQGGINAALGNMTE---DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDG 601
            + G NT  ++ +   RSH+ AAQGG+ A+L N  +   D+   H  DTVKGSDW  DQ   +     APKA+ EL ++G+P++R + G
Sbjct:   26 QKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEGDNEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKG 113          
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: FRDA_HELPJ (Fumarate reductase flavoprotein subunit OS=Helicobacter pylori J99 GN=frdA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  347 EHGFNTACITKLFPTRSHTVAAQGGINAALGNMTE---DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDG 601
            + G NT  ++ +   RSH+ AAQGG+ A+L N  +   D+   H  DTVKGSDW  DQ   +     APKA+ EL ++G+P++R + G
Sbjct:   26 QKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEGDNEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKG 113          
The following BLAST results are available for this feature:
BLAST of FC920510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
DHSA_COXBU7.801e-3763.03Succinate dehydrogenase flavoprotein subunit OS=Co... [more]
FRDA_MYCTU1.161e-1946.67Fumarate reductase flavoprotein subunit OS=Mycobac... [more]
FRDA_MYCBO1.161e-1946.67Fumarate reductase flavoprotein subunit OS=Mycobac... [more]
FRDA_PROVU3.527e-1843.48Fumarate reductase flavoprotein subunit OS=Proteus... [more]
FRDA_HAEIN2.214e-1741.30Fumarate reductase flavoprotein subunit OS=Haemoph... [more]
FRDA_ECOLI4.864e-1742.39Fumarate reductase flavoprotein subunit OS=Escheri... [more]
Y033_METJA1.026e-1242.53Uncharacterized FAD-dependent oxidoreductase MJ003... [more]
DHSA_BACSU1.481e-1145.00Succinate dehydrogenase flavoprotein subunit OS=Ba... [more]
FRDA_HELPY4.310e-1140.91Fumarate reductase flavoprotein subunit OS=Helicob... [more]
FRDA_HELPJ4.310e-1140.91Fumarate reductase flavoprotein subunit OS=Helicob... [more]

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Properties
Property NameValue
Genbank descriptionC32009D04EF RVDevelop1 Citrus clementina cDNA clone C32009D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920510 ID=FC920510; Name=FC920510; organism=Citrus clementina; type=EST; length=754bp
GGTCCGAGCATTCGAGTCAGGTTCCCATCTCTCGTCTCCCCGCTGCCGGT
CCTCCATAGCCTGTCTGTCATTGTAGCAGCCTTTGCGATCTATCGAGTAA
TAACTAATTAGCAAGAGATTGGGAGAGTAAAACACAGATACCGAGATGTG
GCGCTGCGTTTCTCGTGGCCTTGGCTTATCTTCTTATCGTTCAAAACGAT
CAGTCTCCAATGACTCTCTCAGATCTCATTTCTCCAGATTGTTCTCCACC
AATTCCACTGGAGGATACACAATAGTGGATCATACATATGACGCTGTAGT
GGTTGGAGCTGGCGGTGCTGGGCTGAGAGCAGCGATTGGGCTTTCAGAGC
ATGGCTTCAACACCGCTTGCATTACCAAGCTCTTCCCTACTCGTTCTCAC
ACTGTTGCGGCTCAGGGTGGTATTAATGCTGCTTTAGGAAACATGACTGA
AGATGACTGGAGGTGGCACATGTATGACACAGTCAAGGGAAGTGATTGGT
TAGGTGATCAGGATGCTATTCAATATATGTGTAGGGAGGCACCAAAAGCA
GTGATTGAGCTGGAGAATTACGGGTTACCATTTTCTCGGACAGAAGATGG
AAAAATATACCAGCGTGCATTTGGCGGTCAAAGTCTTGATTTTGGAAAGG
TGGGCAGGCGTACCGTTGTGCATGTGCTGCTGACAGAACTGGTCATGCTC
TATTGCATACCCTCTATGGCCAGGCTATGAAACATAATACACAGNTCTTT
GTGG
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