FC920515

Overview
NameFC920515
Unique NameFC920515
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS15_ARATH (3-ketoacyl-CoA synthase 15 OS=Arabidopsis thaliana GN=KCS15 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 52/151 (34.44%), Postives = 84/151 (55.63%), Query Frame = 3 
Query:  213 YMLAYECYKPCDETRRLDTESCARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQL 665
            ++L + CY+P D  + +       +  ++          Q K +  SGIGEE+Y PR VV       +L +   E   +IF  +D+L A T I+   I +LV+N  + +  PSL++ +IN Y LR++ +++NL GMGCSA V+A+DL + L
Sbjct:   89 FLLDFSCYRPPDHLK-ITKSDFIELAMKSGNFNETAIELQRKVLDQSGIGEESYMPR-VVFKPGHRVNLRDGREEAAMVIFGAIDELLAATKINVKHIKILVLNCGVLNTTPSLSAMVINHYKLRHNTESYNLGGMGCSAGVIAIDLAKDL 237
The following BLAST results are available for this feature:
BLAST of FC920515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS15_ARATH2.300e-1934.443-ketoacyl-CoA synthase 15 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC32009D10EF RVDevelop1 Citrus clementina cDNA clone C32009D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920515 ID=FC920515; Name=FC920515; organism=Citrus clementina; type=EST; length=720bp
CCGGGGGCTCATAAAAAAGTTCAAATTCGACTTCCTACGTAAAGAAAGAC
AGGGAAGTCTAGAGATTTTCTTTTTTTCTTTCCCTCCCTTCTCTCTTTGT
CAATTGAGTTATTTTTTTTTCTTTTATCATGGCATTATTGTACTTGTTAC
CTCTTTTTTATATCATTTTTCACTTGTATAAGTGGGTTCTTCAGAAAAGA
GGCCAATGCTGCTATATGCTTGCTTATGAGTGCTACAAGCCATGTGACGA
AACCAGGAGGCTTGACACTGAATCCTGTGCAAGAGTTGTTTGGAGAAACA
AGAAACTGGGGCTTGAAGAATACAGGTTTCAGTTAAAGAACATGGTCAGC
TCAGGCATCGGAGAGGAAACTTACGGCCCAAGAAACGTCGTTGAAGGCAG
AGAAGAGTCACCTTCTTTAGCTGAGGCATTTTCAGAAATGGATGAAATCA
TTTTTGACACACTTGACAAGCTCTTTGCAAGAACAGATATTTCTCCATCT
GAAATTGACGTTCTTGTCGTGAATGTGTCGCTATTTTCTCCTGCTCCTTC
TCTTACATCTCGAATTATAAATCGCTACAACCTGAGGAACGATATTAAGG
CCTTCAATTTATCCGGAATGGGCTGCAGTGCAAGCGTGGTAGCCGTTGAT
CTTGTGCAGCAGCTCTTCAGAACTACAAAAACAGCTTTGCATTGTTGTGA
GCACGAGTCCATGGGACCTA
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