FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:789..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PSEST (60 kDa chaperonin OS=Pseudomonas stutzeri GN=groL PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.419e-68
Identity = 131/224 (58.48%), Postives = 167/224 (74.55%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM +VG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYF+   + M  E ++  LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VVL K+ TTI+     Q  +  RVAQIR  +E+   DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMERVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFINKPDTMVAELDSPLLLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLETATLEHLGNAKRVVLNKENTTIIDGAGQQADIEARVAQIRKQVEDTTSDYDKEKLQERLAKLAGGVAVIKVGAGTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PELCD (60 kDa chaperonin OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=groL PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.419e-68
Identity = 129/225 (57.33%), Postives = 168/225 (74.67%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV+T+EE K+ E  L  VEGMQFDRGY+SPYFVTD+E+M    E+  +L+ DKKI+N RD+IN+LE   +   P+LIIAEDIE EALATLVVN+LRG L +AA+KAPGFG+R+   L+DIAILTGG VI +EVG  L+    ++LGNA ++V+ K+ +TI+    ++  +  RV QIR  IE  + DY+REKL ER+AKL GGVAV++VGA TET
Sbjct:  163 AEAMEKVGKEGVITVEEAKAMETSLETVEGMQFDRGYLSPYFVTDAERMEAVMEDAMILIHDKKISNMRDMINILEAVAKQGRPLLIIAEDIEGEALATLVVNRLRGTLNVAAVKAPGFGDRRKAMLEDIAILTGGKVISEEVGFKLENATIDMLGNAKRIVIDKENSTIIDGAGSEVDIQGRVKQIRAQIEETKSDYDREKLQERLAKLVGGVAVVKVGAATET 387          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_GEOMG (60 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groL PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.419e-68
Identity = 134/226 (59.29%), Postives = 165/226 (73.01%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV-GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV+T+EE K+ E  L  VEGMQFDRGY+SPYFVTD E+M    EN  +L+ DKKI+N +DL+ +LE   +   P+LIIAEDIE EALATLVVNKLRG L I A+KAPGFG+R+   L+DIA+LTGG VI +E+G  L+    ++LG A +V + KD TTI+ GDGS  D +  RV QIR  IE    DY+REKL ER+AKL GGVAVI+VGA TET
Sbjct:  162 AEAMEKVGKEGVITVEEAKAMETSLETVEGMQFDRGYLSPYFVTDPERMEASLENANILIHDKKISNMKDLLPILEQTAKSGRPLLIIAEDIEGEALATLVVNKLRGVLNICAVKAPGFGDRRKAMLEDIAVLTGGKVISEELGFKLENATFDMLGTAKRVTIDKDNTTIIDGDGSEAD-IQGRVKQIRAQIEETSSDYDREKLQERLAKLVGGVAVIKVGAATET 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_GEOLS (60 kDa chaperonin OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=groL PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.419e-68
Identity = 133/226 (58.85%), Postives = 167/226 (73.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV-GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV+T+EE K+ E  L  VEGMQFDRGY+SPYFV+D E+M    EN  +L+ DKKI+N +D++ VLE   +   P++IIAEDIE EALATLVVNKLRG L + A+KAPGFG+R+   L+DIAILTGG VI +E+G  L+    E+LG A ++V+ KD TTI+ GDGS  D +  RV QIR  IE+   DY+REKL ER+AKL GGVAVI+VGA TET
Sbjct:  163 AEAMEKVGKEGVITVEEAKAMETSLETVEGMQFDRGYLSPYFVSDPERMEATLENATILIYDKKISNMKDMLPVLEQTAKSGRPLMIIAEDIEGEALATLVVNKLRGVLNVCAVKAPGFGDRRKAMLEDIAILTGGKVISEEMGFKLENTTMEMLGRAKRIVVDKDNTTIIDGDGSEAD-IQGRVKQIRAQIEDTTSDYDREKLQERLAKLVGGVAVIKVGAATET 387          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_VIBPA (60 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=groL1 PE=3 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 5.419e-68
Identity = 131/224 (58.48%), Postives = 172/224 (76.79%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM +VGR GV+T+EEG++ ++ L VVEGMQFDRGY+SPYF+ + E  +VE EN  +LLVDKKI+N R+L+  LE   + + P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +E+GL L+KV  E LG A +V +TK+ +TI+     +  +  RVAQIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMERVGRDGVITVEEGQALQDELDVVEGMQFDRGYLSPYFINNQEAGSVELENPFILLVDKKISNIRELLPTLEAVAKASRPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEIGLELEKVTLEDLGQAKRVSITKENSTIIDGAGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_METCA (60 kDa chaperonin 1 OS=Methylococcus capsulatus GN=groL1 PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.419e-68
Identity = 126/224 (56.25%), Postives = 170/224 (75.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+G   EN L +VEGMQFDRGY+SPYF+ + + M+ E EN  +L+ +KKI+N R+L+ VLE   +   P++I+AED+E EALATLVVN +RG LK+AA+KAPGFG+R+   L+DIA+LTGGTVI +++GL+L+K     LG A KV +TK+ TTI+    + +A+  RVAQIR  IE+   DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGSGLENQLDIVEGMQFDRGYLSPYFINNQQSMSAELENPFILINEKKISNIRELLPVLEGVAKAGRPLVIVAEDVEGEALATLVVNNMRGILKVAAVKAPGFGDRRKAMLEDIAVLTGGTVISEDIGLSLEKATLADLGTAKKVQITKENTTIIDGAGSSEAIQGRVAQIRKQIEDTTSDYDREKLQERLAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_WOLRE (60 kDa chaperonin OS=Wolinella recta GN=groL PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.078e-68
Identity = 132/225 (58.67%), Postives = 167/225 (74.22%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV+T+EE KS ++ L VVEGMQFDRGY+SPYF+T++EKM VE ++  +LL DKKITN +DL+ VLE   +   P+LIIAEDIE EALATLVVNKLRG L I+A+KAPGFG+R+   L+DIAILTGG V+ +E+G  L+      LG AS V++ KD TTIV     + A+  R+ QI+  I     DY++EKL ER+AKLSGGVAVI+VGA TET
Sbjct:  162 ADAMEKVGKDGVITVEEAKSIQDELNVVEGMQFDRGYLSPYFITNAEKMQVELQSPYILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGEVVSEELGRTLESATLSDLGQASSVIIDKDNTTIVNGAGEKSAIDARIIQIKAQIAETTSDYDKEKLQERLAKLSGGVAVIKVGAATET 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_SILPO (60 kDa chaperonin OS=Silicibacter pomeroyi GN=groL PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.078e-68
Identity = 130/224 (58.04%), Postives = 167/224 (74.55%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K  E    VVEGMQFDRGY+SPYFVT+++KM  E E+C +LL +KK+++ + ++ +LE  I+   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG A K+ +TKD TTIV     +  +  RVAQIRT IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMQKVGNEGVITVEENKGLETETDVVEGMQFDRGYLSPYFVTNADKMIAELEDCMILLHEKKLSSLQPMVPLLEQVIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTMDMLGTAKKISITKDETTIVDGAGEKAEIEARVAQIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_SACD2 (60 kDa chaperonin OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=groL PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.078e-68
Identity = 131/224 (58.48%), Postives = 165/224 (73.66%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM+KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYF+ + E M+VE E   +LLVDKKI+N R+L+ VLE   +   P++I+AED+E EALATLVVN +RG +K+ A KAPGFG+R+   L DIAILTGGTVI +EVGL L+    E LG+A +V +TK+ +TIV        +  RVAQIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  162 AEAMAKVGKEGVITVEEGSGLENELDVVEGMQFDRGYLSPYFINNQESMSVEIEQPYILLVDKKISNIRELLPVLEAVAKSGKPLVIVAEDVEGEALATLVVNNMRGIVKVTACKAPGFGDRRKAMLQDIAILTGGTVISEEVGLDLESATLEHLGSAKRVTMTKENSTIVDGAGVAADIESRVAQIRAQIEETSSDYDREKLQERVAKLAGGVAVIKVGAMTE 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_HALHL (60 kDa chaperonin OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=groL PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.078e-68
Identity = 132/224 (58.93%), Postives = 165/224 (73.66%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   +N L VVEGMQFDRGY+SPYFVTD + M  E E+  +LL DKKI+N RDL+ +LE   +   P+LIIAE++E EALATLVVN LRG +K+AA+KAPGFG+R+   L DIAILTGGTVI DEVG+ L+    + LG A KV ++K+ TTIVG     D +  RV QIR  +E +  DY++EKL ER+AKL GGVAVI+VGA TE
Sbjct:  164 ADAMGKVGKEGVITVEEGSGLDNELDVVEGMQFDRGYLSPYFVTDQQTMKAELEDAAILLHDKKISNIRDLLPLLEGVAKQNRPLLIIAEEVEGEALATLVVNNLRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISDEVGMTLENATVDDLGTAKKVQISKEETTIVGGAGRHDDIMARVEQIRAQMEESTSDYDKEKLQERVAKLVGGVAVIKVGAATE 387          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PSEST5.419e-6858.4860 kDa chaperonin OS=Pseudomonas stutzeri GN=groL ... [more]
CH60_PELCD5.419e-6857.3360 kDa chaperonin OS=Pelobacter carbinolicus (stra... [more]
CH60_GEOMG5.419e-6859.2960 kDa chaperonin OS=Geobacter metallireducens (st... [more]
CH60_GEOLS5.419e-6858.8560 kDa chaperonin OS=Geobacter lovleyi (strain ATC... [more]
CH601_VIBPA5.419e-6858.4860 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=... [more]
CH601_METCA5.419e-6856.2560 kDa chaperonin 1 OS=Methylococcus capsulatus GN... [more]
CH60_WOLRE7.078e-6858.6760 kDa chaperonin OS=Wolinella recta GN=groL PE=3 ... [more]
CH60_SILPO7.078e-6858.0460 kDa chaperonin OS=Silicibacter pomeroyi GN=groL... [more]
CH60_SACD27.078e-6858.4860 kDa chaperonin OS=Saccharophagus degradans (str... [more]
CH60_HALHL7.078e-6858.9360 kDa chaperonin OS=Halorhodospira halophila (str... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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