FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:789..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_NAUPA (60 kDa chaperonin OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=groL PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.207e-67
Identity = 135/226 (59.73%), Postives = 168/226 (74.34%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIR-GAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV+T+EEGKS ++ L VVEGMQFDRGY+SPYFVTD+EKM  E  +  +LL DKKI+N +DL+ +LE  ++ G  P+LIIAEDIE EALATLVVNKLRG L + A+KAPGFG+R+   L DIAILTGG VI +E+G  L+      LG A +VV+ K+ TTIV     + A+  R+AQI+  IE    DY+REKL ER+AKLSGGVAVI+VGA TET
Sbjct:  163 AEAMDKVGKDGVITVEEGKSLQDELEVVEGMQFDRGYLSPYFVTDTEKMVAELNDAYILLYDKKISNMKDLLPLLEQMVQAGNKPLLIIAEDIEGEALATLVVNKLRGVLNVCAVKAPGFGDRRKAMLQDIAILTGGQVISEELGRTLESATLADLGQAGRVVVDKENTTIVDGRGDKAAIEARIAQIKKEIEETTSDYDREKLQERLAKLSGGVAVIKVGAATET 388          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_HELPY (60 kDa chaperonin OS=Helicobacter pylori GN=groL PE=3 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 1.207e-67
Identity = 134/225 (59.56%), Postives = 172/225 (76.44%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV-GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EE K  E+ L VVEGMQFDRGY+SPYFVT++EKM  + +N  +LL DKKI++ +D++ +LE  ++   P+LIIAEDIE EAL TLVVNKLRG L IAA+KAPGFG+R+ + L DIAILTGG VI +E+GL+L+    E LG A ++V+ KD TTIV G G + D V  RVAQI+T I +   DY++EKL ER+AKLSGGVAVI+VGA +E
Sbjct:  162 ADAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHD-VKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASE 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BARBK (60 kDa chaperonin OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=groL PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.207e-67
Identity = 130/224 (58.04%), Postives = 171/224 (76.34%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT+SEKM V+ ++  +L+ +KK++N + L+ VLE  ++   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIA+LT G VI ++VG+ L+ V  E+LG A KV ++K+TTTIV     +  ++ RV+QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 ADAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNSEKMMVDLDDPYILIHEKKLSNLQSLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAVLTSGQVISEDVGIKLENVTLEMLGRAKKVHVSKETTTIVDGAGQKSEINARVSQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_SINMW (60 kDa chaperonin 1 OS=Sinorhizobium medicae (strain WSM419) GN=groL1 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.207e-67
Identity = 131/224 (58.48%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT+ EKM  + E+  +LL +KK++N + ++ VLE  ++   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGGTVI +++G+ L+ V  ++LG A KV +TK+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQAMLPVLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_SHESW (60 kDa chaperonin OS=Shewanella sp. (strain W3-18-1) GN=groL PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 129/224 (57.59%), Postives = 170/224 (75.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  +VE ++  +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q  +  RV+QI+  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 ATAMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_SHESR (60 kDa chaperonin OS=Shewanella sp. (strain MR-7) GN=groL PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 129/224 (57.59%), Postives = 170/224 (75.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  +VE ++  +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q  +  RV+QI+  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 ATAMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_SHESM (60 kDa chaperonin OS=Shewanella sp. (strain MR-4) GN=groL PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 129/224 (57.59%), Postives = 170/224 (75.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  +VE ++  +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q  +  RV+QI+  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 ATAMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_SHESA (60 kDa chaperonin OS=Shewanella sp. (strain ANA-3) GN=groL PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 129/224 (57.59%), Postives = 170/224 (75.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  +VE ++  +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q  +  RV+QI+  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 ATAMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_SHEPC (60 kDa chaperonin OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=groL PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 129/224 (57.59%), Postives = 170/224 (75.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  +VE ++  +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q  +  RV+QI+  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 ATAMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_SHEON (60 kDa chaperonin OS=Shewanella oneidensis GN=groL PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 129/224 (57.59%), Postives = 170/224 (75.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  +VE ++  +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q  +  RV+QI+  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 ATAMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATE 386          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_NAUPA1.207e-6759.7360 kDa chaperonin OS=Nautilia profundicola (strain... [more]
CH60_HELPY1.207e-6759.5660 kDa chaperonin OS=Helicobacter pylori GN=groL P... [more]
CH60_BARBK1.207e-6758.0460 kDa chaperonin OS=Bartonella bacilliformis (str... [more]
CH601_SINMW1.207e-6758.4860 kDa chaperonin 1 OS=Sinorhizobium medicae (stra... [more]
CH60_SHESW1.577e-6757.5960 kDa chaperonin OS=Shewanella sp. (strain W3-18-... [more]
CH60_SHESR1.577e-6757.5960 kDa chaperonin OS=Shewanella sp. (strain MR-7) ... [more]
CH60_SHESM1.577e-6757.5960 kDa chaperonin OS=Shewanella sp. (strain MR-4) ... [more]
CH60_SHESA1.577e-6757.5960 kDa chaperonin OS=Shewanella sp. (strain ANA-3)... [more]
CH60_SHEPC1.577e-6757.5960 kDa chaperonin OS=Shewanella putrefaciens (stra... [more]
CH60_SHEON1.577e-6757.5960 kDa chaperonin OS=Shewanella oneidensis GN=groL... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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