FC920520

Overview
NameFC920520
Unique NameFC920520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:30..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.799e-57
Identity = 110/231 (47.62%), Postives = 156/231 (67.53%), Query Frame = 2
Query:   59 MGLFRSPTMAMFL-LFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            MG  +S  + + + + + + ++A+DMS+VSYD  +   S     D E   +FE+W+VKHGK Y ++ EKE+R  IF++NLRFI+  N+EN +Y++GL  FADL+  EY+ +  GA     R  +    S+RY     + LP SVDWR +GAV EVKDQG C SCWAFST+ AVEG+NKIVTG L++LSEQ+L++C+   N GC GG ++ A+EFI+ NGG+ T+  YP KA
Sbjct:    1 MGSAKSAMLILLVAMVIASCATAIDMSVVSYDDNNRLHSVF---DAEASLIFESWMVKHGKVYGSVAEKERRLTIFEDNLRFINNRNAENLSYRLGLTGFADLSLHEYKEVCHGADPRPPRNHVFMTSSDRYKTSADDVLPKSVDWRNEGAVTEVKDQGHCRSCWAFSTVGAVEGLNKIVTGELVTLSEQDLINCNKE-NNGCGGGKLETAYEFIMKNGGLGTDNDYPYKA 227          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 7.449e-56
Identity = 116/227 (51.10%), Postives = 156/227 (68.72%), Query Frame = 2
Query:   89 MFLLFLFTVSSALDMSIVSYDKTHESKS-SSWRTDDEVMAMFEAWLVKHGKAY-NALG-EKEKRFEIFKENLRFIDEHNS---ENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTS-YNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            + LL +   ++A DMSI+SY+  H ++      T+ E  A ++ WL ++G    NALG E E+RF +F +NL+F+D HN+   E   +++G+NRFADLTNEE+R+  LGA+   +  +       RY     E LP+SVDWR+KGAVA VK+QG CGSCWAFS ++ VE IN++VTG +I+LSEQELV+C T+  N GCNGGLMD AF+FII NGGIDTE  YP KA
Sbjct:   11 LLLLIVGAATAAPDMSIISYNAEHGARGLEEGPTEAEARAAYDLWLAENGGGSPNALGGEHERRFLVFWDNLKFVDAHNARADERGGFRLGMNRFADLTNEEFRATFLGAKVAERSRAA----GERYRHDGVEELPESVDWREKGAVAPVKNQGQCGSCWAFSAVSTVESINQLVTGEMITLSEQELVECSTNGQNSGCNGGLMDDAFDFIIKNGGIDTEDDYPYKA 233          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.460e-53
Identity = 106/207 (51.21%), Postives = 148/207 (71.50%), Query Frame = 2
Query:  125 LDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVA-EVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDT-SYNEGCNGGLMDYAFEFIIDNGGIDTEKIY 736
            L + ++S      + + S R + EV+ M+E WLV++GK YN LGEKE+RF+IFK+NL+ I+EHNS+ NR+Y+ GLN+F+DLT +E+++ +LG +   K  S     + RY  + G+ LPD VDWR++GAV   VK QG CGSCWAF+   AVEGIN+I TG L+SLSEQEL+DCD  + N GC GG   +AFEFI +NGGI ++++Y
Sbjct:   13 LSVLLISISLGVVTATESQRNEGEVLTMYEQWLVENGKNYNGLGEKERRFKIFKDNLKRIEEHNSDPNRSYERGLNKFSDLTADEFQASYLGGKMEKKSLS---DVAERYQYKEGDVLPDEVDWRERGAVVPRVKRQGECGSCWAFAATGAVEGINQITTGELVSLSEQELIDCDRGNDNFGCAGGGAVWAFEFIKENGGIVSDEVY 216          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.522e-52
Identity = 106/216 (49.07%), Postives = 137/216 (63.43%), Query Frame = 2
Query:  104 LFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSN-RYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            L  +S AL ++I      HE +  S   ++ +  ++E W   H     +L EK+KRF +FK N   +   N  ++ YK+ LN+FAD+TN E+R+ + G++    R      R N  ++    + +P SVDWRKKGAV  VKDQG CGSCWAFSTI AVEGIN+I T  L+SLSEQELVDCDT  N+GCNGGLMDYAFEFI   GGI TE  YP +A
Sbjct:    6 LLALSLALVLAITESFDFHEKELES---EESLWGLYERWR-SHHTVSRSLHEKQKRFNVFKHNAMHVHNANKMDKPYKLKLNKFADMTNHEFRNTYSGSKVKHHRMFRGGPRGNGTFMYEKVDTVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEA 217          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.454e-51
Identity = 106/214 (49.53%), Postives = 140/214 (65.42%), Query Frame = 2
Query:  107 FTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTS--LKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            F   + + +S +S  ++         ++D +  ++E W   H  A + L EK +RF +FKEN++FI E N + +  YK+ LN+F D+TN+E+RS + G++    R+   ++    +     VG     S+DWR KGAV  VKDQG CGSCWAFSTIA+VEGIN+I TG L+SLSEQELVDCDTSYNEGCNGGLMDYAFEFI  N GI TE  YP
Sbjct:    6 FIALALVALSFLSIAQSIPFTEKDLASEDSLWNLYEKWRTHHTVARD-LDEKNRRFNVFKENVKFIHEFNQKKDAPYKLALNKFGDMTNQEFRSKYAGSKIQHHRSQRGIQKNTGSFMYENVGSLPAASIDWRAKGAVTGVKDQGQCGSCWAFSTIASVEGINQIKTGELVSLSEQELVDCDTSYNEGCNGGLMDYAFEFIQKN-GITTEDSYP 217          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.454e-51
Identity = 118/239 (49.37%), Postives = 149/239 (62.34%), Query Frame = 2
Query:   83 MAMFLLFL--FTVSSALD----MSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKH------GKAYNALGEKEKRFEIFKENLRFIDEHNS---ENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAV-AEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDC-DTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            MA FLL L  F   +A      MSI+ Y+  H  +    RT+ E  A ++ WL +H      G     +GE E+RF +F +NL+F+D HN+   E   +++G+NRFADLTN E+R+ +LG     +   +       Y     EALPDSVDWR KGAV A VK+QG CGSCWAFS +AAVEGINKIVTG L+SLSEQELV+C     N GCNGG+MD AF FI  NGG+DTE+ YP  A
Sbjct:   15 MACFLLILAAFAPPAAAAPPDIMSIIRYNAEHGVRGLE-RTEAEARAAYDLWLARHRRGGGGGSRNGFIGEHERRFRVFWDNLKFVDAHNARADERGGFRLGMNRFADLTNGEFRATYLGTTPAGRGRRV----GEAYRHDGVEALPDSVDWRDKGAVVAPVKNQGQCGSCWAFSAVAAVEGINKIVTGELVSLSEQELVECARNGQNSGCNGGIMDDAFAFIARNGGLDTEEDYPYTA 248          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CYSEP_VIGMU (Vignain OS=Vigna mungo PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.676e-50
Identity = 105/223 (47.09%), Postives = 139/223 (62.33%), Query Frame = 2
Query:   83 MAMFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKR-SNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            MAM  L    +S +L + + +    HE    S   ++ +  ++E W   H     +LGEK KRF +FK N+  +   N  ++ YK+ LN+FAD+TN E+RS + G++    +    S+  S  ++     ++P SVDWRKKGAV +VKDQG CGSCWAFSTI AVEGIN+I T  L+SLSEQELVDCD   N+GCNGGLM+ AFEFI   GGI TE  YP  A
Sbjct:    1 MAMKKLLWVVLSLSLVLGVANSFDFHEKDLES---EESLWDLYERWR-SHHTVSRSLGEKHKRFNVFKANVMHVHNTNKMDKPYKLKLNKFADMTNHEFRSTYAGSKVNHHKMFRGSQHGSGTFMYEKVGSVPASVDWRKKGAVTDVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDKEENQGCNGGLMESAFEFIKQKGGITTESNYPYTA 219          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CYSEP_PHAVU (Vignain OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.676e-50
Identity = 103/221 (46.61%), Postives = 138/221 (62.44%), Query Frame = 2
Query:   89 MFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSN-RYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            ++++  F++   +  S   +DK   S+ S W        ++E W   H     +LGEK KRF +FK NL  +   N  ++ YK+ LN+FAD+TN E+RS + G++    R    +   N  ++     ++P SVDWRKKGAV +VKDQG CGSCWAFST+ AVEGIN+I T  L++LSEQELVDCD   N+GCNGGLM+ AFEFI   GGI TE  YP KA
Sbjct:    7 LWVVLSFSLVLGVANSFDFHDKDLASEESLWD-------LYERWR-SHHTVSRSLGEKHKRFNVFKANLMHVHNTNKMDKPYKLKLNKFADMTNHEFRSTYAGSKVNHPRMFRGTPHENGAFMYEKVVSVPPSVDWRKKGAVTDVKDQGQCGSCWAFSTVVAVEGINQIKTNKLVALSEQELVDCDKEENQGCNGGLMESAFEFIKQKGGITTESNYPYKA 219          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.839e-46
Identity = 91/187 (48.66%), Postives = 133/187 (71.12%), Query Frame = 2
Query:  191 DEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKR-TSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            + ++ +F++W++KH K Y ++ EK  RFEIF++NL +IDE N +N +Y +GLN FADL+N+E++  ++G  F A+  T L+   +  +  +     P S+DWR KGAV  VK+QG+CGSCWAFSTIA VEGINKIVTG+L+ LSEQELVDCD  ++ GC GG    + +++ +N G+ T K+YP +A
Sbjct:   42 ERLIQLFDSWMLKHNKIYESIDEKIYRFEIFRDNLMYIDETNKKNNSYWLGLNGFADLSNDEFKKKYVG--FVAEDFTGLEHFDNEDFTYKHVTNYPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCD-KHSYGCKGGYQTTSLQYVANN-GVHTSKVYPYQA 224          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 3.137e-46
Identity = 97/217 (44.70%), Postives = 134/217 (61.75%), Query Frame = 2
Query:   98 LFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            LF+    S  D SIV Y +   + +      + ++ +F +W++ H K Y  + EK  RFEIFK+NL +IDE N +N +Y +GLN FADL+N+E+   ++G+   A   +++      ++      LP++VDWRKKGAV  V+ QGSCGSCWAFS +A VEGINKI TG L+ LSEQELVDC+   + GC GG   YA E++  N GI     YP KA
Sbjct:   17 LFVHMSVSFGDFSIVGYSQDDLTST------ERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFNEKYVGSLIDA---TIEQSYDEEFINEDTVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR-SHGCKGGYPPYALEYVAKN-GIHLRSKYPYKA 222          
The following BLAST results are available for this feature:
BLAST of FC920520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CPR3_ARATH8.799e-5747.62Probable cysteine proteinase At4g11310 OS=Arabidop... [more]
ORYB_ORYSJ7.449e-5651.10Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CPR2_ARATH3.460e-5351.21Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
CYSEP_RICCO8.522e-5249.07Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CYSP_HEMSP1.454e-5149.53Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CYSP1_ORYSJ1.454e-5149.37Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
CYSEP_VIGMU4.676e-5047.09Vignain OS=Vigna mungo PE=1 SV=1[more]
CYSEP_PHAVU4.676e-5046.61Vignain OS=Phaseolus vulgaris PE=2 SV=2[more]
PAPA2_CARPA1.839e-4648.66Chymopapain OS=Carica papaya PE=1 SV=2[more]
PAPA3_CARPA3.137e-4644.70Caricain OS=Carica papaya PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32009E03EF RVDevelop1 Citrus clementina cDNA clone C32009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920520 ID=FC920520; Name=FC920520; organism=Citrus clementina; type=EST; length=752bp
CCTCATCAATCCATCTTCTTCTCCCAAAAAGAAAAAAAAAAAGTTCTTTT
CTCAAAAGATGGGTTTGTTTAGATCACCAACCATGGCCATGTTTTTACTT
TTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTTATGA
TAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTTA
TGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAACGCT
TTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAGGTT
TATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGAACC
GGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGGGTGCA
CGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCGTTA
TCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGA
AAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGG
GCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTACAGG
TAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCAT
ATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATT
ATTGATAATGGAGGTATTGACACAGAGAAGATTTACCCTACAAAAGCATG
AT
back to top