FC920520

Overview
NameFC920520
Unique NameFC920520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:30..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CYSP2_HORVU (Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.721e-44
Identity = 101/233 (43.35%), Postives = 134/233 (57.51%), Query Frame = 2
Query:   59 MGLFRSPTMAMFLLFLFTVSSALDM--SIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            MGL     +   ++      +A+++  +I   DK  ES+ + W        ++E W   H +      EK +RF  FK N  FI  HN   +  Y++ LNRF D+   E+R+  +G       +   S     Y       LP SVDWR+KGAV  VKDQG CGSCWAFST+ +VEGIN I TGSL+SLSEQEL+DCDT+ N+GC GGLMD AFE+I +NGG+ TE  YP +A
Sbjct:    1 MGLLSKKLLVASMVAAVLAVAAVELCSAIPMEDKDLESEEALWD-------LYERWQSAH-RVRRHHAEKHRRFGTFKSNAHFIHSHNKRGDHPYRLHLNRFGDMDQAEFRATFVGDLRRDTPSKPPSVPGFMYAALNVSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRA 225          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CYSP1_HORVU (Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=EPB1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.248e-44
Identity = 101/233 (43.35%), Postives = 133/233 (57.08%), Query Frame = 2
Query:   59 MGLFRSPTMAMFLLFLFTVSSALDM--SIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            MGL     +   ++      +A+++  +I   DK  ES+ + W        ++E W   H +      EK +RF  FK N  FI  HN   +  Y++ LNRF D+   E+R+  +G           S     Y       LP SVDWR+KGAV  VKDQG CGSCWAFST+ +VEGIN I TGSL+SLSEQEL+DCDT+ N+GC GGLMD AFE+I +NGG+ TE  YP +A
Sbjct:    1 MGLLSKKLLVASMVAAVLAVAAVELCSAIPMEDKDLESEEALWD-------LYERWQSAH-RVRRHHAEKHRRFGTFKSNAHFIHSHNKRGDHPYRLHLNRFGDMDQAEFRATFVGDLRRDTPAKPPSVPGFMYAALNVSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRA 225          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.457e-43
Identity = 79/107 (73.83%), Postives = 94/107 (87.85%), Query Frame = 2
Query:  425 LKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTK 745
            L   +S+RYLP+VG++LP+S+DWR+KG +  VKDQGSCGSCWAFS +AA+E IN IVTG+LISLSEQELVDCD SYNEGC+GGLMDYAFEF+I NGGIDTE+ YP K
Sbjct:    2 LSKNKSDRYLPKVGDSLPESIDWREKGVLVGVKDQGSCGSCWAFSAVAAMESINAIVTGNLISLSEQELVDCDRSYNEGCDGGLMDYAFEFVIKNGGIDTEEDYPYK 108          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.768e-41
Identity = 92/215 (42.79%), Postives = 134/215 (62.33%), Query Frame = 2
Query:   98 LFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEA-LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            LF++   S  D SIV Y +   + +      + ++ +FE+W++KH K Y  + EK  RFEIFK+NL++IDE N +N +Y +GLN FAD++N+E++  + G+  G   T+   + S   +   G+  +P+ VDWR+KGAV  VK+QGSCGSCWAFS +  +EGI KI TG+L   SEQEL+DCD   + GCNGG    A + ++   GI     YP
Sbjct:   17 LFVYMGLSFGDFSIVGYSQNDLTST------ERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNYTTT---ELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR-SYGCNGGYPWSALQ-LVAQYGIHYRNTYP 220          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.155e-40
Identity = 86/180 (47.78%), Postives = 114/180 (63.33%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            F  W++ H K+Y +  E   R+ IFK N+ ++ + NS+     +GLN FAD+TNEEYR+ +LG +F A  +SL   +  +       A   S DWR +GAV  VK+QG CG CW+FST  + EG +    G L+SLSEQ L+DC T  N GC+GGLM YAFE+II+N GIDTE  YP KA
Sbjct:   30 FTDWMITHQKSYTS-EEFGARYNIFKANMDYVQQWNSKGSETVLGLNNFADITNEEYRNTYLGTKFDA--SSLIGTQEEKVFTTSSAA---SKDWRSEGAVTPVKNQGQCGGCWSFSTTGSTEGAHFQSKGELVSLSEQNLIDCSTE-NSGCDGGLMTYAFEYIINNNGIDTESSYPYKA 202          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.508e-40
Identity = 86/198 (43.43%), Postives = 120/198 (60.61%), Query Frame = 2
Query:  119 SALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNG 712
            S  D SIV Y +   + +      + ++ +F +W++KH K Y  + EK  RFEIFK+NL++IDE N     Y +GLN F+DL+N+E++  ++G+                ++      LP+SVDWR KGAV  VK QG C SCWAFST+A VEGINKI TG+L+ LSEQELVDCD   + GCN G    + +++  NG
Sbjct:   24 SYCDFSIVGYSQDDLTST------ERLIQLFNSWMLKHNKNYKNVDEKLYRFEIFKDNLKYIDERNKMINGYWLGLNEFSDLSNDEFKEKYVGS---LPEDYTNQPYDEEFVNEDIVDLPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCD-KQSYGCNRGYQSTSLQYVAQNG 211          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.572e-40
Identity = 89/187 (47.59%), Postives = 115/187 (61.50%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY---NEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            ++ W   H K Y    E+E R  I+++NL+FI  HN E      TY+VG+N   D+TNEE     +  R GA R S +S ++  +       LPD+VDWR+KG V EVK QGSCG+CWAFS + A+EG  K+ TG LISLS Q LVDC       N+GC GG M  AF++IIDNGGI+ +  YP KA
Sbjct:   36 WDLWKKTHEKEYKDKNEEEVRRLIWEKNLKFIMIHNLEYSMGMHTYQVGMNDMGDMTNEE-----ISCRMGALRISRQSPKTVTFRSYSNRTLPDTVDWREKGCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNEEKYGNKGCGGGYMTEAFQYIIDNGGIEADASYPYKA 217          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CYSP6_DICDI (Cysteine proteinase 6 OS=Dictyostelium discoideum GN=cprF PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.730e-40
Identity = 89/183 (48.63%), Postives = 115/183 (62.84%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG--SLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            F  W++ H + Y++  E   RF IFK N+ +I+E N++     +GLN FAD+TNEEYR+ +LG  F A  +SL+   S +     G    +SVDWR KGAV  +K+QG CG CW+FS   A EG   I  G   L S+SEQ+L+DC  SY N GC GGLM  AFE+II+NGGIDTE  YP  A
Sbjct:   30 FTNWMIAHQRHYSS-EEFNGRFNIFKANMDYINEWNTKGSETVLGLNVFADITNEEYRATYLGTPFDA--SSLEMTPSEKVF---GGVQANSVDWRAKGAVTPIKNQGECGGCWSFSATGATEGAQYIANGDSDLTSVSEQQLIDCSGSYGNNGCEGGLMTLAFEYIINNGGIDTESSYPFTA 206          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.667e-39
Identity = 91/218 (41.74%), Postives = 129/218 (59.17%), Query Frame = 2
Query:   95 LLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMHLGARF--GAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            L+FLF    A+  S         S +S    +D +M  FE W+ ++G+ Y    EK +RF+IFK N++ I+  NS N  +Y +G+N+F D+T  E+ + + G       +R  + S            A+P S+DWR  GAV EVK+Q  CGSCW+F+ IA VEGI KI TG L+SLSEQE++DC  SY  GC GG ++ A++FII N G+ TE+ YP
Sbjct:    7 LVFLFLFLCAMWAS--------PSAASRDEPNDPMMKRFEEWMAEYGRVYKDDDEKMRRFQIFKNNVKHIETFNSRNENSYTLGINQFTDMTKSEFVAQYTGVSLPLNIEREPVVSFDDVNI-----SAVPQSIDWRDYGAVNEVKNQNPCGSCWSFAAIATVEGIYKIKTGYLVSLSEQEVLDCAVSY--GCKGGWVNKAYDFIISNNGVTTEENYP 209          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.177e-39
Identity = 82/178 (46.07%), Postives = 110/178 (61.80%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNE-GCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            F  + V+HGK Y    E ++RF IF E+L  +   N     Y++G+NRFAD++ EE+++  LGA      T   + R      R   ALP++ DWR+ G V+ VKDQG CGSCW FST  ++E      TG  +SLSEQ+LVDC T+YN  GC+GGL   AFE+I  NGG+DTE+ YP
Sbjct:   62 FARFAVRHGKRYGDAAEVQRRFRIFSESLELVRSTNRRGLPYRLGINRFADMSWEEFQASRLGAAQNCSATLAGNHRM-----RDAAALPETKDWREDGIVSPVKDQGHCGSCWTFSTTGSLEAAYTQATGKPVSLSEQQLVDCATAYNNFGCSGGLPSQAFEYIKYNGGLDTEEAYP 234          
The following BLAST results are available for this feature:
BLAST of FC920520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CYSP2_HORVU1.721e-4443.35Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=E... [more]
CYSP1_HORVU2.248e-4443.35Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=E... [more]
CYSPL_SOLLC1.457e-4373.83Low-temperature-induced cysteine proteinase (Fragm... [more]
PAPA1_CARPA6.768e-4142.79Papain OS=Carica papaya PE=1 SV=1[more]
CYSP5_DICDI1.155e-4047.78Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]
PAPA4_CARPA1.508e-4043.43Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
CATS_MOUSE2.572e-4047.59Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CYSP6_DICDI5.730e-4048.63Cysteine proteinase 6 OS=Dictyostelium discoideum ... [more]
BROM1_ANACO1.667e-3941.74Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]
ORYC_ORYSJ2.177e-3946.07Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]

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Properties
Property NameValue
Genbank descriptionC32009E03EF RVDevelop1 Citrus clementina cDNA clone C32009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920520 ID=FC920520; Name=FC920520; organism=Citrus clementina; type=EST; length=752bp
CCTCATCAATCCATCTTCTTCTCCCAAAAAGAAAAAAAAAAAGTTCTTTT
CTCAAAAGATGGGTTTGTTTAGATCACCAACCATGGCCATGTTTTTACTT
TTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTTATGA
TAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTTA
TGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAACGCT
TTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAGGTT
TATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGAACC
GGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGGGTGCA
CGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCGTTA
TCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGA
AAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGG
GCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTACAGG
TAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCAT
ATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATT
ATTGATAATGGAGGTATTGACACAGAGAAGATTTACCCTACAAAAGCATG
AT
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