FC920520

Overview
NameFC920520
Unique NameFC920520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:30..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATK_HUMAN (Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.045e-33
Identity = 80/183 (43.72%), Postives = 107/183 (58.47%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR--YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            +E W   H K YN   ++  R  I+++NL++I  HN E      TY++ +N   D+T+EE      G +       L   RSN   Y+P      PDSVD+RKKG V  VK+QG CGSCWAFS++ A+EG  K  TG L++LS Q LVDC  S N+GC GG M  AF+++  N GID+E  YP
Sbjct:   26 WELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLK-----VPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNAFQYVQKNRGIDSEDAYP 202          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.045e-33
Identity = 81/179 (45.25%), Postives = 112/179 (62.57%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGA-VAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            F++W+V+H K Y++  E   R + F  NLR I+ HN+ N T+K+GLN+F+D++ +E +  +L +    +  +  + +SN YL   G   P S+DWRKKG  V  VK+QGSCGSCW FST  A+E    I TG L  L+EQ+LVDC  ++ N GC GGL   AFE+I  N GI  E  YP
Sbjct:   35 FQSWMVQHQKKYSS-EEYYHRLQAFASNLREINAHNARNHTFKMGLNQFSDMSFDELKRKYLWS----EPQNCSATKSN-YLRGTGP-YPPSMDWRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYP 206          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 140.584 bits (353), Expect = 8.860e-33
Identity = 79/179 (44.13%), Postives = 110/179 (61.45%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGA-VAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            F++W+ KH K Y+   E   R + F  N R I+ HN+ N T+K+ LN+F+D++  E +  +L +    +  +  + +SN YL   G   P SVDWRKKG  V+ VK+QG+CGSCW FST  A+E    I TG ++SL+EQ+LVDC   + N GC GGL   AFE+I+ N GI  E  YP
Sbjct:   35 FKSWMSKHRKTYST-EEYHHRLQTFASNWRKINAHNNGNHTFKMALNQFSDMSFAEIKHKYLWS----EPQNCSATKSN-YLRGTGP-YPPSVDWRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGKMLSLAEQQLVDCAQDFNNHGCQGGLPSQAFEYILYNKGIMGEDTYP 206          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.157e-32
Identity = 75/179 (41.90%), Postives = 107/179 (59.78%), Query Frame = 2
Query:  227 KHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            ++G+ Y    E+  R  +F++N + I++ N +      T+KV +N+F D+TNEE+ ++  G + G++      +    +    G    D VDWR K  V  VKDQ  CGSCWAFS   A+EG + +    L+SLSEQ+LVDC T Y N+GC GG M  AF++I DNGGIDTE  YP +A
Sbjct:   26 QYGRKYGDAKEELYRQRVFQQNEQLIEDFNKKFENGEVTFKVAMNQFGDMTNEEFNAVMKGYKKGSR-----GEPKAVFTAEAGPMAAD-VDWRTKALVTPVKDQEQCGSCWAFSATGALEGQHFLKNDELVSLSEQQLVDCSTDYGNDGCGGGWMTSAFDYIKDNGGIDTESSYPYEA 198          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.511e-32
Identity = 79/181 (43.65%), Postives = 111/181 (61.33%), Query Frame = 2
Query:  227 KHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDS--VDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYN-EGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            K+G+ Y    E   R  IF++N ++I+E N +      T+ + +N+F D+T EE+ ++  G          +S   + + P+  E  P +  VDWR KGAV  VKDQG CGSCWAFST  ++EG + + TGSLISL+EQ+LVDC   Y  +GCNGG M+ AF++I  N GIDTE  YP +A
Sbjct:   26 KYGRQYVDAEEDSYRRVIFEQNQKYIEEFNKKYENGEVTFNLAMNKFGDMTLEEFNAVMKG------NIPRRSAPVSVFYPKK-ETGPQATEVDWRTKGAVTPVKDQGQCGSCWAFSTTGSLEGQHFLKTGSLISLAEQQLVDCSRPYGPQGCNGGWMNDAFDYIKANNGIDTEAAYPYEA 199          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.974e-32
Identity = 81/189 (42.86%), Postives = 108/189 (57.14%), Query Frame = 2
Query:  188 DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVG----LNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            D  +   +  W   H + Y A  E+  R  ++++N++ I+ HN E    K G    +N F D+TNEE+R M +G     K    K  R   +L      LP SVDWRKKG V  VK+Q  CGSCWAFS   A+EG     TG L+SLSEQ LVDC     N+GCNGG M  AF+++ +NGG+D+E+ YP
Sbjct:   22 DQNLDTKWYQWKATHRRLYGA-NEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQM-MGCFRNQKFRKGKVFREPLFLD-----LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYP 203          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.974e-32
Identity = 76/179 (42.46%), Postives = 111/179 (62.01%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKG-AVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            F +W+ +H K Y++  E   R ++F  N R I  HN  N T+K+GLN+F+D++  E +  +L +    +  +  + +SN YL   G   P S+DWRKKG  V+ VK+QG+CGSCW FST  A+E    I +G +++L+EQ+LVDC  ++ N GC GGL   AFE+I+ N GI  E  YP
Sbjct:   33 FTSWMKQHQKTYSSR-EYSHRLQVFANNWRKIQAHNQRNHTFKMGLNQFSDMSFAEIKHKYLWS----EPQNCSATKSN-YLRGTGP-YPSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKGIMGEDSYP 204          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 75/186 (40.32%), Postives = 106/186 (56.99%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVG-EALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD--------TSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            F +++ + GK+Y    E   R  +FK+NLR    H   + + + G+ +F+DLT  E+R  +LG R   +    +   S    P +  + LPD  DWR  GAV  VK+QGSCGSCW+FS   A+EG + + TG L  LSEQ+ VDCD         S + GCNGGLM  AF ++   GG+++EK YP
Sbjct:   48 FLSFVQRFGKSYKDADEHAYRLSVFKDNLRRARRHQLLDPSAEHGVTKFSDLTPAEFRRTYLGLRKSRRALLRELGESAHEAPVLPTDGLPDDFDWRDHGAVGPVKNQGSCGSCWSFSASGALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSGCNGGLMTTAFSYLQKAGGLESEKDYP 233          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.743e-32
Identity = 63/89 (70.79%), Postives = 77/89 (86.52%), Query Frame = 2
Query:  473 LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            LPDS+DWR+ GAV  VK+QG CGSCWAFST+AAVEGIN+IVTG LISLSEQ+LVDC T+ N GC GG M+ AF+FI++NGGI++E+ YP
Sbjct:    3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA-NHGCRGGWMNPAFQFIVNNGGINSEETYP 90          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATK_PIG (Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.501e-32
Identity = 79/196 (40.31%), Postives = 113/196 (57.65%), Query Frame = 2
Query:  170 SSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR--YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            SS+   ++ +   +E W   + K YN+  ++  R  I+++NL+ I  HN E      TY++ +N   D+T+EE      G +     +     RSN   Y+P      PDS+D+RKKG V  VK+QG CGSCWAFS++ A+EG  K  TG L++LS Q LVDC  S N+GC GG M  AF+++  N GID+E  YP
Sbjct:   14 SSALYPEEILDTQWELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSHS-----RSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNAFQYVQKNRGIDSEDAYP 203          
The following BLAST results are available for this feature:
BLAST of FC920520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CATK_HUMAN3.045e-3343.72Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1[more]
CATH_BOVIN3.045e-3345.25Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATH_HUMAN8.860e-3344.13Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CYSP3_HOMAM1.157e-3241.90Digestive cysteine proteinase 3 OS=Homarus america... [more]
CYSP2_HOMAM1.511e-3243.65Digestive cysteine proteinase 2 OS=Homarus america... [more]
CATL2_HUMAN1.974e-3242.86Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CATH_RAT1.974e-3242.46Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CYSP1_MAIZE3.367e-3240.32Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CPGP2_ZINOF5.743e-3270.79Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CATK_PIG7.501e-3240.31Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32009E03EF RVDevelop1 Citrus clementina cDNA clone C32009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920520 ID=FC920520; Name=FC920520; organism=Citrus clementina; type=EST; length=752bp
CCTCATCAATCCATCTTCTTCTCCCAAAAAGAAAAAAAAAAAGTTCTTTT
CTCAAAAGATGGGTTTGTTTAGATCACCAACCATGGCCATGTTTTTACTT
TTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTTATGA
TAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTTA
TGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAACGCT
TTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAGGTT
TATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGAACC
GGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGGGTGCA
CGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCGTTA
TCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGA
AAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGG
GCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTACAGG
TAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCAT
ATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATT
ATTGATAATGGAGGTATTGACACAGAGAAGATTTACCCTACAAAAGCATG
AT
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