FC920521

Overview
NameFC920521
Unique NameFC920521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920521 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.079e-58
Identity = 85/106 (80.19%), Postives = 96/106 (90.57%), Query Frame = 3
Query:  279 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENTR 596
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAEN +
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNK 106          

HSP 2 Score: 64.3142 bits (155), Expect = 4.079e-58
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 2
Query:  590 HKGARVLVVCSEITAVTFRGPADTHLDSLVGPGLFGDGAAAV 715
            +K ARVL+VCSE TAVTFRGP++T +DSLVG  LF DGAAA+
Sbjct:  105 NKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAI 146          
BLAST of FC920521 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.218e-53
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 3
Query:  363 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENTR 596
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAEN +
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNK 78          

HSP 2 Score: 77.0258 bits (188), Expect = 6.218e-53
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 2
Query:  590 HKGARVLVVCSEITAVTFRGPADTHLDSLVGPGLFGDGAAAV 715
            +KGARVLVVCSE+TAVTFRGP+DTHLDSLVG  LFGDGAAA+
Sbjct:   77 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAAL 118          
BLAST of FC920521 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.037e-39
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 3
Query:  420 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENTR 596
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAEN +
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNK 58          

HSP 2 Score: 77.0258 bits (188), Expect = 3.037e-39
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 2
Query:  590 HKGARVLVVCSEITAVTFRGPADTHLDSLVGPGLFGDGAAAV 715
            +KGARVLVVCSE+TAVTFRGP+DTHLDSLVG  LFGDGAAA+
Sbjct:   57 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAAL 98          
BLAST of FC920521 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.035e-23
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 2
Query:  590 HKGARVLVVCSEITAVTFRGPADTHLDSLVGPGLFGDGAAAV 715
            +KGARVLVVCSEITAVTFRGP+DTHLDSLVG  LFGDGAAAV
Sbjct:   24 NKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAV 65          

HSP 2 Score: 51.6026 bits (122), Expect = 2.035e-23
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 3
Query:  522 MMYQQGCFAGGTVLRLAKDLAENTR 596
            MMYQQGCFAGGTVLRLAKDLAEN +
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNK 25          
BLAST of FC920521 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.458e-18
Identity = 58/199 (29.15%), Postives = 98/199 (49.25%), Query Frame = 3
Query:   18 PPTYSLRV-QLEMATVQEIRNAQ--------RADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAE 587
            PP  S++  Q +   VQ I+  Q        +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+
Sbjct: 2751 PPIQSVQQHQKQQQKVQVIQQQQQPLSRLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAK 2945          

HSP 2 Score: 28.8758 bits (63), Expect = 3.458e-18
Identity = 14/37 (37.84%), Postives = 22/37 (59.46%), Query Frame = 2
Query:  602 RVLVVCSEITAVTFRGPADTHLDSLVGPGLFGDGAAA 712
            R+LVVC+E+ ++ F        D +V   +F DG+AA
Sbjct: 2951 RILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAA 2985          
The following BLAST results are available for this feature:
BLAST of FC920521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY4.079e-5880.19Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA6.218e-5392.31Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA3.037e-3988.14Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO2.035e-2390.48Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI3.458e-1829.15Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC32009E04EF RVDevelop1 Citrus clementina cDNA clone C32009E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920521 ID=FC920521; Name=FC920521; organism=Citrus clementina; type=EST; length=716bp
AACTCACCAAGCACGAGCCACCAACATATTCATTAAGGGTTCAACTTGAA
ATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGCCCGGC
CACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAACCAGG
CTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGACG
GAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGATTAAGAA
GCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACATGT
GCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGTGGTGGTC
GAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCAAAGAATG
GGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACCACCTCCG
GCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGATCGGCCTG
CGCCCCTCCGTCAAGCGCTTCATGATGTACCAACAAGGATGTTTCGCCGG
CGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACACAAGGGCGC
TCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCAGTCACTTTCCGCGGCC
CTGCCGATACTCATCTTGATTCTCTTGTGGGCCCAGGCTTGTTCGGTGAT
GGTGCTGCTGCTGTGA
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