FC920524

Overview
NameFC920524
Unique NameFC920524
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10215 contig Ccv1_Contig10215:34..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_HUMAN (40S ribosomal protein S13 OS=Homo sapiens GN=RPS13 PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 5.355e-64
Identity = 117/151 (77.48%), Postives = 137/151 (90.73%), Query Frame = 2 
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
[Close]
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_CRIGR (40S ribosomal protein S13 OS=Cricetulus griseus GN=RPS13 PE=3 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 5.355e-64
Identity = 117/151 (77.48%), Postives = 137/151 (90.73%), Query Frame = 2 
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLASDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
[Close]
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_CHICK (40S ribosomal protein S13 OS=Gallus gallus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 5.355e-64
Identity = 117/151 (77.48%), Postives = 137/151 (90.73%), Query Frame = 2 
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
[Close]
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_BOVIN (40S ribosomal protein S13 OS=Bos taurus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 5.355e-64
Identity = 117/151 (77.48%), Postives = 137/151 (90.73%), Query Frame = 2 
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
[Close]
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_LUMRU (40S ribosomal protein S13 OS=Lumbricus rubellus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 242.276 bits (617), Expect = 2.035e-63
Identity = 121/151 (80.13%), Postives = 131/151 (86.75%), Query Frame = 2 
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKGIS SALPY+R+ P+WLK+   DV++ I K AKKGLTPSQIGVILRDSHG+AQ + V G+KILRILKA GLAP IPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK  K LPPVWKYES TAS LVA
Sbjct:    1 MGRMHAPGKGISQSALPYRRSVPTWLKLGPDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQTRHVAGNKILRILKAKGLAPTIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKTRKVLPPVWKYESATASALVA 151
[Close]
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_ICTPU (40S ribosomal protein S13 OS=Ictalurus punctatus GN=rps13 PE=2 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 1.010e-62
Identity = 116/151 (76.82%), Postives = 136/151 (90.07%), Query Frame = 2 
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKG+S SALP++R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLILVESRIHRLARYYK  + L P WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPFRRSVPTWLKLTSDDVKEQIFKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILVESRIHRLARYYKTKRVLAPNWKYESSTASALVA 151
[Close]
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_WUCBA (40S ribosomal protein S13 OS=Wuchereria bancrofti GN=RPS13 PE=3 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.723e-62
Identity = 114/151 (75.50%), Postives = 136/151 (90.07%), Query Frame = 2 
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKGIS SALPY+R+ P+WLK++S++V++ + + AKKGL PSQIGVILRDSHG+AQV+ VTG+KI+RILKA G+APEIPEDLYHLIKKAV IRKHLERNRKDKDSK+RLILVESRIHRLARYYK  ++LP  WKYES+TAS LV+
Sbjct:    1 MGRMHNPGKGISQSALPYRRSVPTWLKLTSEEVQEQVTRLAKKGLRPSQIGVILRDSHGVAQVRRVTGNKIVRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATWKYESSTASALVS 151
[Close]
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_BRUPA (40S ribosomal protein S13 OS=Brugia pahangi GN=RPS13 PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.723e-62
Identity = 114/151 (75.50%), Postives = 136/151 (90.07%), Query Frame = 2 
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKGIS SALPY+R+ P+WLK++S++V++ + + AKKGL PSQIGVILRDSHG+AQV+ VTG+KI+RILKA G+APEIPEDLYHLIKKAV IRKHLERNRKDKDSK+RLILVESRIHRLARYYK  ++LP  WKYES+TAS LV+
Sbjct:    1 MGRMHNPGKGISQSALPYRRSVPTWLKLTSEEVQEQVTRLAKKGLRPSQIGVILRDSHGVAQVRRVTGNKIVRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATWKYESSTASALVS 151
[Close]
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_GILMI (40S ribosomal protein S13 OS=Gillichthys mirabilis GN=rps13 PE=2 SV=3)

HSP 1 Score: 238.81 bits (608), Expect = 2.250e-62
Identity = 115/151 (76.16%), Postives = 135/151 (89.40%), Query Frame = 2 
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + L P WKY S+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIFKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLAPNWKYXSSTASALVA 151
[Close]
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_SPOFR (40S ribosomal protein S13 OS=Spodoptera frugiperda GN=RpS13 PE=2 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 2.939e-62
Identity = 116/151 (76.82%), Postives = 134/151 (88.74%), Query Frame = 2 
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKGIS SALPY+R+ P+WLK+++ DV++ I K  KKGLTPSQIGV+LRDSHG+AQV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151
The following BLAST results are available for this feature:
BLAST of FC920524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS13_HUMAN5.355e-6477.4840S ribosomal protein S13 OS=Homo sapiens GN=RPS13... [more]
RS13_CRIGR5.355e-6477.4840S ribosomal protein S13 OS=Cricetulus griseus GN... [more]
RS13_CHICK5.355e-6477.4840S ribosomal protein S13 OS=Gallus gallus GN=RPS1... [more]
RS13_BOVIN5.355e-6477.4840S ribosomal protein S13 OS=Bos taurus GN=RPS13 P... [more]
RS13_LUMRU2.035e-6380.1340S ribosomal protein S13 OS=Lumbricus rubellus GN... [more]
RS13_ICTPU1.010e-6276.8240S ribosomal protein S13 OS=Ictalurus punctatus G... [more]
RS13_WUCBA1.723e-6275.5040S ribosomal protein S13 OS=Wuchereria bancrofti ... [more]
RS13_BRUPA1.723e-6275.5040S ribosomal protein S13 OS=Brugia pahangi GN=RPS... [more]
RS13_GILMI2.250e-6276.1640S ribosomal protein S13 OS=Gillichthys mirabilis... [more]
RS13_SPOFR2.939e-6276.8240S ribosomal protein S13 OS=Spodoptera frugiperda... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32009E07EF RVDevelop1 Citrus clementina cDNA clone C32009E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920524 ID=FC920524; Name=FC920524; organism=Citrus clementina; type=EST; length=727bp
GGTACAAGTTGAACACAAAGCTTGCTGCTTCACCTCCGTCGACGTCACCA
TGGGTCGTATGCACAGTCGCGGTAAGGGTATTTCTGCTTCAGCTTTGCCT
TACAAGAGAACACCACCAAGTTGGCTCAAGATTTCCAGCCAAGATGTTGA
GGATAACATCTGTAAGTTTGCAAAGAAGGGTTTGACTCCATCACAGATTG
GTGTTATTCTTCGTGACTCTCACGGTATTGCCCAGGTTAAGAGCGTTACT
GGAAGCAAGATTTTGCGTATCCTCAAGGCTCACGGACTCGCACCTGAAAT
TCCTGAGGATCTGTACCACCTCATCAAGAAGGCTGTTGCTATTAGGAAGC
ATTTGGAAAGGAACAGGAAGGACAAGGATTCCAAGTTCCGCTTGATTCTT
GTTGAAAGCAGGATTCACAGGCTTGCTCGCTACTACAAGAAAACCAAGAA
GCTTCCTCCTGTCTGGAAATATGAGTCTACTACCGCCAGCACACTTGTGG
CCTAGGCTAAGCAAGATGCTAGGCGTTGTTTGTGATATCCTTTGTTGGTA
TCACAACACTCTTTAAGGAGCCTGATGATTTTATGGTGGATTAGTATAAG
TTCAGATGTAAGACCTTTATTCATAGTTTTTTTGGAAAGATTTAGTCCTT
GGAGGAACAGAAATTTGGAACTTGTTTTTTATTTTGTTGCCTAACGTTTT
GNTTCCTTTCGAAATTTGTATTTTTGA
back to top