FC920524

Overview
NameFC920524
Unique NameFC920524
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10215 contig Ccv1_Contig10215:34..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_CANMA (40S ribosomal protein S13 OS=Candida maltosa GN=RPS13 PE=3 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.939e-62
Identity = 113/151 (74.83%), Postives = 132/151 (87.42%), Query Frame = 2
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMHS GKGIS+SA+PY R  PSW K+SS +V + + K+A+KGLTPSQIGVILRD+HG++Q K VTG+K+LRILK++GLAPE+PEDLY LIKKAVA+RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+    LPP WKYES TAS LVA
Sbjct:    1 MGRMHSAGKGISSSAIPYSRNAPSWFKLSSDEVVEQVIKYARKGLTPSQIGVILRDAHGVSQAKIVTGNKVLRILKSNGLAPELPEDLYFLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTVSVLPPNWKYESATASALVA 151          
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_SCHPO (40S ribosomal protein S13 OS=Schizosaccharomyces pombe GN=rps13 PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 8.550e-62
Identity = 112/151 (74.17%), Postives = 132/151 (87.42%), Query Frame = 2
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMHS+GKGI++SALPY R+PP+W K  +  V + I KF+KKG++PSQIGV LRDSHGI QV+ +TG KI+RILKA+GLAPE+PEDLY+LIKKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+K   LPP WKYES TAS LVA
Sbjct:    1 MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGIPQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVGALPPTWKYESATASALVA 151          
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_DROME (40S ribosomal protein S13 OS=Drosophila melanogaster GN=RpS13 PE=2 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 8.550e-62
Identity = 115/151 (76.16%), Postives = 132/151 (87.42%), Query Frame = 2
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKGIS SALPY+RT PSWLK+++ DV++ I K  KKGLTPS+IG+ILRDSHG+AQV+ V G+KILRI+K+ GL P+IPEDLYH+IKKAVAIRKHLERNRKDKD KFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151          
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_CIOIN (40S ribosomal protein S13 OS=Ciona intestinalis GN=RPS13 PE=2 SV=3)

HSP 1 Score: 236.498 bits (602), Expect = 1.117e-61
Identity = 115/151 (76.16%), Postives = 133/151 (88.08%), Query Frame = 2
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKG+S+SALPY+R+ P+WLK+SS+DV++ I K AKKGL PSQIGVILRDSHG AQV+ VTG++ILR+LKA GLAP++PED+YHLIKKAVA+RKHLERNRKD DSKFRLILVESRIHRL RYYK    LPP WKYES TAS LVA
Sbjct:    1 MGRMHAPGKGLSSSALPYRRSVPTWLKLSSEDVKEQIYKLAKKGLRPSQIGVILRDSHGXAQVRFVTGNQILRVLKAKGLAPDLPEDIYHLIKKAVAMRKHLERNRKDTDSKFRLILVESRIHRLGRYYKTKGVLPPNWKYESATASALVA 151          
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_PLUXY (40S ribosomal protein S13 OS=Plutella xylostella GN=RpS13 PE=2 SV=3)

HSP 1 Score: 235.728 bits (600), Expect = 1.905e-61
Identity = 115/151 (76.16%), Postives = 133/151 (88.08%), Query Frame = 2
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKGIS SALPY+R+ P+WLK+++ DV++ I K  KKGLTPSQIGV+LRDSHG+AQV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+ KHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMGKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151          
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_CHOPR (40S ribosomal protein S13 OS=Choristoneura parallela GN=RpS13 PE=2 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 2.488e-61
Identity = 115/151 (76.16%), Postives = 132/151 (87.42%), Query Frame = 2
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKGIS SALPY+R+ P+WLK+++ DV++ I K  KKGLTPSQIGV LRDSHG+ QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVKLRDSHGVVQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151          
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_AGABI (40S ribosomal protein S13 OS=Agaricus bisporus GN=RPS13 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.249e-61
Identity = 112/151 (74.17%), Postives = 134/151 (88.74%), Query Frame = 2
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKGIS+SALPY+RTPPSWLK +S++V + I K A+KGLTPSQIGV LR+SHGI QV+ VTG+KILRILK+ GL P IPEDL+HLIKKAVA+RKH+E NRKDKDSKFRLIL+ESRIHRLARYYK  +++PP +KY+S TASTL+A
Sbjct:    1 MGRMHAPGKGISSSALPYRRTPPSWLKTTSEEVVEQIVKLARKGLTPSQIGVTLRNSHGIPQVRFVTGNKILRILKSQGLGPSIPEDLWHLIKKAVAVRKHMETNRKDKDSKFRLILIESRIHRLARYYKTKQQIPPTFKYDSATASTLIA 151          
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_YEAST (40S ribosomal protein S13 OS=Saccharomyces cerevisiae GN=RPS13 PE=1 SV=3)

HSP 1 Score: 231.876 bits (590), Expect = 2.750e-60
Identity = 108/150 (72.00%), Postives = 131/150 (87.33%), Query Frame = 2
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 499
            MGRMHS GKGIS+SA+PY R  P+W K+SS+ V + I K+A+KGLTPSQIGV+LRD+HG+ Q + +TG+KI+RILK++GLAPEIPEDLY+LIKKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYY+    LPP WKYES TAS LV
Sbjct:    1 MGRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVAVLPPNWKYESATASALV 150          
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_ANOGA (40S ribosomal protein S13 OS=Anopheles gambiae GN=RpS13 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.750e-60
Identity = 113/151 (74.83%), Postives = 132/151 (87.42%), Query Frame = 2
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKGIS SALPY+R+ PSWLK+S++DV++ I K  KKG+TPSQIG+ILRDSHG+AQV+ V G+K+LRI+KA GL P+IPEDLY LIKKAV+IRKHLERNRKD DSKFRLIL+ESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGISKSALPYRRSVPSWLKLSAEDVKEQIKKLGKKGMTPSQIGIILRDSHGVAQVRFVNGNKVLRIMKAVGLKPDIPEDLYFLIKKAVSIRKHLERNRKDIDSKFRLILIESRIHRLARYYKIKAVLPPNWKYESSTASALVA 151          
BLAST of FC920524 vs. ExPASy Swiss-Prot
Match: RS13_CAEEL (40S ribosomal protein S13 OS=Caenorhabditis elegans GN=rps-13 PE=2 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 5.187e-59
Identity = 106/151 (70.20%), Postives = 133/151 (88.08%), Query Frame = 2
Query:   50 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 502
            MGRMH+ GKG++ SA+PY+R+ PSW K+++++V+D I K AKKGL PSQIGVILRDSHG+ QV+ + G+KI RILK+ G+APE+PEDLYHL+KKAVAIRKHLER+RKD DSK+RLILVESRIHRLARYYK  ++LPP WKYES TA++LV+
Sbjct:    1 MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGVGQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVESRIHRLARYYKTKRQLPPTWKYESGTAASLVS 151          
The following BLAST results are available for this feature:
BLAST of FC920524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS13_CANMA2.939e-6274.8340S ribosomal protein S13 OS=Candida maltosa GN=RP... [more]
RS13_SCHPO8.550e-6274.1740S ribosomal protein S13 OS=Schizosaccharomyces p... [more]
RS13_DROME8.550e-6276.1640S ribosomal protein S13 OS=Drosophila melanogast... [more]
RS13_CIOIN1.117e-6176.1640S ribosomal protein S13 OS=Ciona intestinalis GN... [more]
RS13_PLUXY1.905e-6176.1640S ribosomal protein S13 OS=Plutella xylostella G... [more]
RS13_CHOPR2.488e-6176.1640S ribosomal protein S13 OS=Choristoneura paralle... [more]
RS13_AGABI3.249e-6174.1740S ribosomal protein S13 OS=Agaricus bisporus GN=... [more]
RS13_YEAST2.750e-6072.0040S ribosomal protein S13 OS=Saccharomyces cerevis... [more]
RS13_ANOGA2.750e-6074.8340S ribosomal protein S13 OS=Anopheles gambiae GN=... [more]
RS13_CAEEL5.187e-5970.2040S ribosomal protein S13 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionC32009E07EF RVDevelop1 Citrus clementina cDNA clone C32009E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920524 ID=FC920524; Name=FC920524; organism=Citrus clementina; type=EST; length=727bp
GGTACAAGTTGAACACAAAGCTTGCTGCTTCACCTCCGTCGACGTCACCA
TGGGTCGTATGCACAGTCGCGGTAAGGGTATTTCTGCTTCAGCTTTGCCT
TACAAGAGAACACCACCAAGTTGGCTCAAGATTTCCAGCCAAGATGTTGA
GGATAACATCTGTAAGTTTGCAAAGAAGGGTTTGACTCCATCACAGATTG
GTGTTATTCTTCGTGACTCTCACGGTATTGCCCAGGTTAAGAGCGTTACT
GGAAGCAAGATTTTGCGTATCCTCAAGGCTCACGGACTCGCACCTGAAAT
TCCTGAGGATCTGTACCACCTCATCAAGAAGGCTGTTGCTATTAGGAAGC
ATTTGGAAAGGAACAGGAAGGACAAGGATTCCAAGTTCCGCTTGATTCTT
GTTGAAAGCAGGATTCACAGGCTTGCTCGCTACTACAAGAAAACCAAGAA
GCTTCCTCCTGTCTGGAAATATGAGTCTACTACCGCCAGCACACTTGTGG
CCTAGGCTAAGCAAGATGCTAGGCGTTGTTTGTGATATCCTTTGTTGGTA
TCACAACACTCTTTAAGGAGCCTGATGATTTTATGGTGGATTAGTATAAG
TTCAGATGTAAGACCTTTATTCATAGTTTTTTTGGAAAGATTTAGTCCTT
GGAGGAACAGAAATTTGGAACTTGTTTTTTATTTTGTTGCCTAACGTTTT
GNTTCCTTTCGAAATTTGTATTTTTGA
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