FC920525

Overview
NameFC920525
Unique NameFC920525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920525_ssr43 microsatellite FC920525_ssr43:43..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15182 contig Ccv1_Contig15182:1..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920525 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.539e-41
Identity = 83/175 (47.43%), Postives = 117/175 (66.86%), Query Frame = 3
Query:  168 TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECIKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEV 689
            TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++VEL+E+
Sbjct:    7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREI 180          
BLAST of FC920525 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.847e-41
Identity = 82/175 (46.86%), Postives = 117/175 (66.86%), Query Frame = 3
Query:  168 TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECIKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEV 689
            TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP +KPN+V G  VQ+CW KFARY++VEL+E+
Sbjct:    7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDDNVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTNKPNLVCGP-VQICWHKFARYWDVELREI 180          
BLAST of FC920525 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39
Identity = 77/183 (42.08%), Postives = 118/183 (64.48%), Query Frame = 3
Query:  147 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECIKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFEVELKEV 689
            M+      D  E L   F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE +KL+  ++ KN +D  EYP TTE++NRCVNMIA L+N   ++ +  +G  T+GSSEA ML G+A K  W+++ ++ G   +  KPN+V  +  QVCWEKF  Y+++E++EV
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCVYWDIEMREV 181          
BLAST of FC920525 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39
Identity = 77/183 (42.08%), Postives = 118/183 (64.48%), Query Frame = 3
Query:  147 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECIKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFEVELKEV 689
            M+      D  E L   F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE +KL+  ++ KN +D  EYP TTE++NRCVNMIA L+N   ++ +  +G  T+GSSEA ML G+A K  W+++ ++ G   +  KPN+V  +  QVCWEKF  Y+++E++EV
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCIYWDIEMREV 181          
BLAST of FC920525 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.633e-38
Identity = 79/181 (43.65%), Postives = 118/181 (65.19%), Query Frame = 3
Query:  147 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECIKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEV 689
            M +   +T+  +    ++AS      I ++ + + S   E    +I DEL+LDGN + NLA+F  T ++ E   L+   I+KN +D DEYP T E+++RCV+++A L+N+P  +    +G  T GSSEA ML G+A K +W++ RK+QGKP+DKPNIVTG  VQ+CW KFA YF++EL+EV
Sbjct:    1 MSLHHVKTNKYKGFYDSYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNAKQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSP--ESSETIGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELREV 178          
BLAST of FC920525 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.122e-37
Identity = 75/173 (43.35%), Postives = 109/173 (63.01%), Query Frame = 3
Query:  171 DSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECIKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEV 689
            D  + L   +        I +FK+ D+    E   ++I DEL+LDGN + NLA+F  T ++     ++   I+KN +D DEYP + E++NRC++++A L+N P  D    +G  T GSSEA ML GLA K  W++ RK+ G PYDKPNIVTG  VQ+CW KFA YF++E++E+
Sbjct:    7 DKHKSLYDNYVQSATTEEIAKFKLADDPNEPETIKKLIMDELLLDGNSKQNLATFCQTDLDKNIHSIMDKCIDKNMIDKDEYPQSAEIENRCLHILADLWNAP--DSSDTIGCSTTGSSEAAMLGGLALKWNWRENRKKLGLPYDKPNIVTGP-VQICWHKFALYFDIEIREI 176          
BLAST of FC920525 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.822e-34
Identity = 71/153 (46.41%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  231 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECIKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEV 689
            ++ +P   +P + +YQ+I++EL LDGNP LNLASFV T+   +  KL+  ++ KN  D DEYP   EL  RC++M+A L++     D+  +G  T GSSEAIML GLA K++W+ + K  GK   KPNI+  +  QV  EKF RYFEVE + V
Sbjct:   59 KYSVPKKGLPADLSYQLIHNELTLDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLIELTQRCISMLAQLWH--ANPDEEPIGCATTGSSEAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECRLV 209          
BLAST of FC920525 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.487e-33
Identity = 70/166 (42.17%), Postives = 104/166 (62.65%), Query Frame = 3
Query:  198 FASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECIKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFEVELKEV 689
            F S     +IP++ +    M    AYQ++ D+LM +GN R NLA+F  T+ME E   L+  ++ KN +D  EYP T EL+NRCVN++A L+N P   D + +G  TVGSSEA ML GLA K +W+   +++G      +PN++  +  QVCWEKF  Y++V+++ V
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KDMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVV 182          
BLAST of FC920525 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.306e-32
Identity = 69/166 (41.57%), Postives = 104/166 (62.65%), Query Frame = 3
Query:  198 FASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECIKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFEVELKEV 689
            F S     +IP++ +    M    AYQ++ D+LM +GN R NLA+F  T+ME E   L+  ++ KN +D  EYP T EL+NRCVN++A L+N P   + + +G  TVGSSEA ML GLA K +W+   +++G      +PN++  +  QVCWEKF  Y++V+++ V
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KEMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVV 182          
BLAST of FC920525 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.480e-32
Identity = 68/178 (38.20%), Postives = 108/178 (60.67%), Query Frame = 3
Query:  162 TETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECIKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFEVELKEV 689
            ++ +    L   F S      IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+  +G  T+GSSEA ML G+A K  W+++ ++ G      KPN+V  +  QVCWEKF  Y++++++ V
Sbjct:    4 SKENKESYLEPVFGSSAEDRDIPKYTLAKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSGYQVCWEKFCVYWDIDMRVV 179          
The following BLAST results are available for this feature:
BLAST of FC920525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEA_ECO571.539e-4147.43Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEB_ECOL65.847e-4146.86Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCE_LACLM2.457e-3942.08Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA2.457e-3942.08Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
GADA_DICDI4.633e-3843.65Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
GADB_DICDI5.122e-3743.35Glutamate decarboxylase B OS=Dictyostelium discoid... [more]
DCE_YEAST1.822e-3446.41Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
DCEC_LISMO4.487e-3342.17Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEC_LISIN1.306e-3241.57Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_LISIN6.480e-3238.20Glutamate decarboxylase beta OS=Listeria innocua G... [more]

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Properties
Property NameValue
Genbank descriptionC32009E08EF RVDevelop1 Citrus clementina cDNA clone C32009E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920525 ID=FC920525; Name=FC920525; organism=Citrus clementina; type=EST; length=693bp
GCCACCGAAGAGTGAAAAGCGAAGTTGTCATCAAAAGTCAAAACTCACTC
ACTCTCAATCGCTCTCTTTCCTTTGTGTCTCAACAATTTCTATTCATTTC
TCTCAGACTCAAGAGCCTCTCTTCTCTGCAAAAAACAAAAACAAAAATGG
TGATTTCAACAACAGAAACAGACTCCAGGGAGATTTTGAGCTCCACATTT
GCTTCAAGATATGTCCGTGCTGCTATTCCCAGATTCAAGATGCCAGATAA
TTCAATGCCAAAGGAGGCAGCCTATCAGGTAATAAATGATGAGCTGATGT
TAGATGGAAATCCAAGGCTGAACTTGGCATCTTTTGTGACCACTTGGATG
GAGCCCGAGTGTATTAAGCTTGTCATGGCTTCGATTAATAAAAACTATGT
TGACATGGATGAATACCCTGTAACCACAGAGCTCCAGAATCGGTGTGTGA
ATATGATTGCCCACCTATTTAATACTCCAGTTGCGGATGACAAGACTGCA
GTGGGCGTGGGGACTGTAGGTTCATCAGAGGCAATAATGCTTGCTGGCTT
GGCTTTTAAAAGGAAGTGGCAGCAGAAGAGAAAAGAGCAAGGCAAACCCT
ATGATAAGCCCAATATAGTCACTGGAGCTAATGTGCAGGTATGCTGGGAG
AAATTTGCGAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAAC
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