FC920529

Overview
NameFC920529
Unique NameFC920529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920529_ssr32 microsatellite FC920529_ssr32:32..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_RHISN (Probable glutamate dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=NGR_a01340 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.649e-23
Identity = 60/154 (38.96%), Postives = 90/154 (58.44%), Query Frame = 3
Query:  264 GSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIG-IHTDIPAPDMGTNAQTMAWILDEYSKFHG----HSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            G + S++G+R   +    P+KG IRY    D +EV ALA LMT K ++ D+P+GG+KG +   P+  +  ELE +TR FTQ+++             D+GT  + MAW++DE+ + +      S A VTGKP+  GG  GR  +TGRGV +A +
Sbjct:   31 GRMYSFIGWRSVREHCE-PVKGDIRYASNADAEEVEALAALMTLKCSLVDVPFGGSKGALKIDPRGWTPQELEHITRRFTQEMNKRPDRARRQCVGSDIGTGEREMAWMMDEFRRANPTDVVTSGACVTGKPLSKGGIAGRAESTGRGVQFAIQ 183          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_EMENI (NADP-specific glutamate dehydrogenase OS=Emericella nidulans GN=gdhA PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.224e-23
Identity = 60/165 (36.36%), Postives = 85/165 (51.52%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            +P R I+       D G +    G+RVQ + A GP KGG+R+HP V+   +  L     +K A+  +  GG KGG    PK  S+SE+ R    F  ++   IG  TD+PA D+G   + + ++  +Y +       V+TGK    GGSL R  ATG GVVY  E
Sbjct:   42 VPERVIQFRVVWENDKGEVQINRGYRVQFNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLNMGGGKGGSDFDPKGKSDSEIRRFCTAFMTELCKHIGADTDVPAGDIGVTGREVGFLFGQYRRIRNQWEGVLTGKGGSWGGSLIRPEATGYGVVYYVE 206          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_HEBCY (NADP-specific glutamate dehydrogenase OS=Hebeloma cylindrosporum PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.129e-23
Identity = 59/165 (35.76%), Postives = 85/165 (51.52%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            +P R ++       D G      GFRVQ++ A GP KGG+R HP V+   +  L    T+K A+  +  GG KGG    PK  S+SE+ R    F  ++   IG  TD+PA D+GT  + + ++   Y K       ++TGK +  GGS  R  ATG G++Y  E
Sbjct:   39 VPERVLQFRVVWEDDQGVAQVNHGFRVQYNSALGPYKGGLRLHPSVNLSILKFLGFEQTFKNALTGLSMGGGKGGSDFDPKGKSDSEIRRFCFSFMGELFRHIGSDTDVPAGDIGTGGREIGFLFGAYKKLRNEFTGMLTGKGLTWGGSFIRPEATGYGLIYFVE 203          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_HELPY (NADP-specific glutamate dehydrogenase OS=Helicobacter pylori GN=gdhA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.062e-22
Identity = 62/171 (36.26%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  198 LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            LER L+ P REI        D+  +    G RV+ + A GP KGG+R+HP V+   +  L      K ++  +  GGAKGG    PK  S  E+ R  + F  +++  IG  TD+PA D+G   + + ++  +Y K       V+TGK +  GGSL R+ ATG G VY  E
Sbjct:   47 LER-LIEPEREIFFRVCWLDDNNQIQVNRGCRVEFNSAIGPYKGGLRFHPSVNESVIKFLGFEQVLKNSLTTLAMGGAKGGSDFDPKGKSEHEIMRFCQAFMNELYRHIGATTDVPAGDIGVGEREIGYLFGQYKKLVNRFEGVLTGKGLTYGGSLCRKEATGYGCVYFAE 216          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_GIALA (NADP-specific glutamate dehydrogenase OS=Giardia lamblia PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.062e-22
Identity = 59/167 (35.33%), Postives = 87/167 (52.10%), Query Frame = 3
Query:  210 LLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            +L P R I        D G +    GFRVQ++ A GP KGG+R+HP V+   +  L      K ++  +P GG KGG    PK  S++E+ R  + F  ++   +G  TD+PA D+G  A+ + ++  +Y +       V+TGK +  GGS  R  ATG G VY  E
Sbjct:   51 MLEPERVIIFRVPWMDDAGRINVNRGFRVQYNSALGPYKGGLRFHPSVNLSILKFLGFEQILKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELQRHVGADTDVPAGDIGVGAREIGYLYGQYKRLRNEFTGVLTGKNVKWGGSFIRPEATGYGAVYFLE 217          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_CORGL (NADP-specific glutamate dehydrogenase OS=Corynebacterium glutamicum GN=gdh PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.062e-22
Identity = 62/172 (36.05%), Postives = 90/172 (52.33%), Query Frame = 3
Query:  189 DSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGRGVVY 701
            D  L + L  P R++        D G +    GFRVQ + A GP KGG+R+HP V+   V  L     +K ++  +P GG KGG    PK  S+ E+ R  + F  ++H  IG + D+PA D+G   + + ++   Y +  + H   V+TGK +  GGSL R  ATG G VY
Sbjct:   47 DYGLIQRLCEPERQLIFRVPWVDDQGQVHVNRGFRVQFNSALGPYKGGLRFHPSVNLGIVKFLGFEQIFKNSLTGLPIGGGKGGSDFDPKGKSDLEIMRFCQSFMTELHRHIGEYRDVPAGDIGVGGREIGYLFGHYRRMANQHESGVLTGKGLTWGGSLVRTEATGYGCVY 218          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_COREF (NADP-specific glutamate dehydrogenase OS=Corynebacterium efficiens GN=gdh PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.062e-22
Identity = 62/172 (36.05%), Postives = 90/172 (52.33%), Query Frame = 3
Query:  189 DSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGRGVVY 701
            D  L + L  P R++        D+G +    GFRVQ + A GP KGG+R+HP V+   V  L     +K ++  +P GG KGG    PK  S  E+ R  + F  ++H  IG + D+PA D+G   + + ++   Y +  + H   V+TGK +  GGSL R  ATG G VY
Sbjct:   47 DYGLIQRLCEPERQLIFRVPWVDDNGQVHVNRGFRVQFNSALGPYKGGLRFHPSVNLGIVKFLGFEQIFKNSLTGLPIGGGKGGSDFDPKGKSELEIMRFCQSFMTELHRHIGEYRDVPAGDIGVGGREIGYLFGHYRRLANQHESGVLTGKGLTWGGSLVRTEATGFGTVY 218          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_HAEIN (NADP-specific glutamate dehydrogenase OS=Haemophilus influenzae GN=gdhA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.811e-22
Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 3
Query:  189 DSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            ++ LER L+ P R  +       D G +     FRVQ + A GP KGG+R+HP V+   +  L     +K A+  +P GGAKGG    PK  S++E+ R  +    +++  +G  TD+PA D+G   + + ++     K    S  V TG+ +  GGSL R  ATG G++Y  +  L
Sbjct:   48 EALLER-LVEPERAFQFRVAWTDDKGQVQVNRAFRVQFNSAIGPFKGGMRFHPSVNLSILKFLGFEQIFKNALTTLPMGGAKGGSDFDPKGKSDAEVMRFCQALMAELYRHVGADTDVPAGDIGVGGREVGYLAGYMKKLSNQSACVFTGRGLSFGGSLIRPEATGYGLIYFAQAML 223          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_SALTY (NADP-specific glutamate dehydrogenase OS=Salmonella typhimurium GN=gdhA PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.034e-22
Identity = 64/176 (36.36%), Postives = 91/176 (51.70%), Query Frame = 3
Query:  192 SKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            S LER L+ P R I+       D   +     +RVQ + A GP KGG+R+HP V+   +  L    T+K A+  +P GG KGG    PK  S  E+ R  +    +++  +G  TD+PA D+G   + + ++     K   +S  V TGK +  GGSL R  ATG G+VY TE  L
Sbjct:   49 SLLER-LVEPERVIQFRVVWLDDKNQVQVNRAWRVQFNSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGPDTDVPAGDIGVGGREVGFMAGMMRKLSNNSSCVFTGKGLSFGGSLIRPEATGYGLVYFTEAML 223          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_SALTI (NADP-specific glutamate dehydrogenase OS=Salmonella typhi GN=gdhA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.034e-22
Identity = 64/176 (36.36%), Postives = 91/176 (51.70%), Query Frame = 3
Query:  192 SKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            S LER L+ P R I+       D   +     +RVQ + A GP KGG+R+HP V+   +  L    T+K A+  +P GG KGG    PK  S  E+ R  +    +++  +G  TD+PA D+G   + + ++     K   +S  V TGK +  GGSL R  ATG G+VY TE  L
Sbjct:   49 SLLER-LVEPERVIQFRVVWLDDKNQVQVNRAWRVQFNSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGPDTDVPAGDIGVGGREVGFMAGMMRKLSNNSACVFTGKGLSFGGSLIRPEATGYGLVYFTEAML 223          
The following BLAST results are available for this feature:
BLAST of FC920529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DHE3_RHISN3.649e-2338.96Probable glutamate dehydrogenase OS=Rhizobium sp. ... [more]
DHE4_EMENI6.224e-2336.36NADP-specific glutamate dehydrogenase OS=Emericell... [more]
DHE4_HEBCY8.129e-2335.76NADP-specific glutamate dehydrogenase OS=Hebeloma ... [more]
DHE4_HELPY1.062e-2236.26NADP-specific glutamate dehydrogenase OS=Helicobac... [more]
DHE4_GIALA1.062e-2235.33NADP-specific glutamate dehydrogenase OS=Giardia l... [more]
DHE4_CORGL1.062e-2236.05NADP-specific glutamate dehydrogenase OS=Corynebac... [more]
DHE4_COREF1.062e-2236.05NADP-specific glutamate dehydrogenase OS=Corynebac... [more]
DHE4_HAEIN1.811e-2233.90NADP-specific glutamate dehydrogenase OS=Haemophil... [more]
DHE4_SALTY4.034e-2236.36NADP-specific glutamate dehydrogenase OS=Salmonell... [more]
DHE4_SALTI4.034e-2236.36NADP-specific glutamate dehydrogenase OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionC32009E12EF RVDevelop1 Citrus clementina cDNA clone C32009E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920529 ID=FC920529; Name=FC920529; organism=Citrus clementina; type=EST; length=743bp
GATTCATTCACATTCGCATTCACAAAAGCTAATTCATTCATTCATTCATT
CATATATTCTTGTTCAAAAGCCCCATCAGTGGTTTTAGCTCTCTTTTAAC
TTGTTTCGAAAGTTTCAGAATCATCGTCATGAACGCTCTTGCAGCAACGA
GCCGTAACTTTCGCAACGCTGCACGCATTCTTGGGCTTGACTCTAAGCTT
GAGAGGAGTCTTCTGATCCCTTTTAGAGAGATCAAAGTGGAGTGCACTAT
CCCCAAAGATGATGGAAGTCTGGTTTCGTACGTTGGATTTAGAGTACAGC
ATGATGACGCACGTGGGCCCATGAAGGGAGGCATCAGATATCATCCTGAG
GTTGATCCTGATGAAGTAAATGCTCTGGCTCAACTAATGACCTGGAAGAC
TGCTGTGGCAGATATACCATATGGTGGAGCAAAGGGTGGAATTGGATGCA
GCCCAAAAGAATTAAGCAACAGTGAGCTGGAACGTCTAACTCGCGTTTTC
ACTCAGAAGATACATGACCTCATTGGAATCCATACTGACATACCAGCCCC
GGACATGGGAACAAATGCCCAGACTATGGCATGGATTTTGGATGAGTACT
CAAAATTTCATGGTCACTCTCCTGCTGTCGTCACAGGAAAGCCCATTGAT
CTTGGCGGATCACTAGGTAGAGAGGCTGCAACTGGGCGTGGTGTCGTTTA
TGCTACAGAGCTCTACTTGCTGAACATGGACAGGCATTAGGGA
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