FC920531

Overview
NameFC920531
Unique NameFC920531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: 3HIDH_PONAB (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 57/211 (27.01%), Postives = 105/211 (49.76%), Query Frame = 2
Query:   77 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGIHPWXLYDI 703
            +ASK  VGF+GL      MA +L++ GY +  +++      +F   G    +SP D  +    ++ ++       + + G  G+LK ++KG+++I  STI P+  ++L K   +    A  +DA VS G+    +G       G  +    A+  L  M   + ++ G +G G   K+ N++L  + +I + EA++LG++ G+ P  L  I
Sbjct:   36 VASKTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMG--AVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNV-VYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKI 243          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: 3HIDH_HUMAN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 57/211 (27.01%), Postives = 105/211 (49.76%), Query Frame = 2
Query:   77 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGIHPWXLYDI 703
            +ASK  VGF+GL      MA +L++ GY +  +++      +F   G    +SP D  +    ++ ++       + + G  G+LK ++KG+++I  STI P+  ++L K   +    A  +DA VS G+    +G       G  +    A+  L  M   + ++ G +G G   K+ N++L  + +I + EA++LG++ G+ P  L  I
Sbjct:   36 VASKTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMG--AVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNV-VYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKI 243          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: MMSB_PSEAE (3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa GN=mmsB PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.341e-15
Identity = 52/205 (25.37%), Postives = 101/205 (49.27%), Query Frame = 2
Query:   89 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGIHPWXLYDI 703
            + F+GL      MAA+L+++G++V  F++    V      G   + S +   +    ++ ++     ++ ++ G +G+L  +    ++I  STI P   +K+ +       T  ++DA VS G+     G       G +    RARP L  M + ++   G+ GAG   K+ N++L G+ +  + EA++LGV+ G+ P  L ++
Sbjct:    4 IAFLGLGNMGGPMAANLLKAGHRVNVFDLQPKAVLGLVEQGAQGADSALQCCEGAEVVISMLPAGQHVESLYLGDDGLLARVAGKPLLIDCSTIAPETARKVAEAAAAKGLT--LLDAPVSGGVGGARAGTLSFIVGGPAEGFARARPVLENMGRNIF-HAGDHGAGQVAKICNNMLLGILMAGTAEALALGVKNGLDPAVLSEV 205          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: YIHU_SALTY (Uncharacterized oxidoreductase yihU OS=Salmonella typhimurium GN=yihU PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 49/201 (24.38%), Postives = 96/201 (47.76%), Query Frame = 2
Query:   89 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVND----LLEGVHLIASVEAISLGVQFGI 679
            + F+GL +    MA++L++ G+++  F+++   V +    G   ++SP  A      ++ ++ + D +  + FG +GV + L + A++I  STI P     L        +   ++D  + R       G  ++   G +  +ERA P L AM   L +  G  G G ++K++N+     L  +   A+V   +LG+ F +
Sbjct:    4 IAFIGLGQMGSPMASNLLKQGHQLSVFDVNPDAVQRLVDKGAQPASSPAQATIGAEFVITMLPNGDLVRSVLFGEQGVCETLSREALVIDMSTIHPLQTDNLIADM--QSKGFSMMDVPIGRTSDNAITGTLLLLAGGTAEQVERATPVLMAMGNEL-VNTGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDV 201          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: GARR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 43/204 (21.08%), Postives = 101/204 (49.51%), Query Frame = 2
Query:   86 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGIHPWXLY 697
            KVGF+GL      M+ +L+++GY +   + +   +      G   +++     +    ++ ++ +   + ++  G  G+++G + G V+I  S+I P   +++ +      +   ++DA VS G  +  +G   +   G     ++    + AM  ++ +  GE+GAG+  K+ N ++  +++ A  EA++L  + G++P  +Y
Sbjct:    2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEAL--KAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV-VHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVY 202          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: GARR_ECOL6 (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6 GN=garR PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 43/204 (21.08%), Postives = 101/204 (49.51%), Query Frame = 2
Query:   86 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGIHPWXLY 697
            KVGF+GL      M+ +L+++GY +   + +   +      G   +++     +    ++ ++ +   + ++  G  G+++G + G V+I  S+I P   +++ +      +   ++DA VS G  +  +G   +   G     ++    + AM  ++ +  GE+GAG+  K+ N ++  +++ A  EA++L  + G++P  +Y
Sbjct:    2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEAL--KAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV-VHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVY 202          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: 3HIDH_CAEEL (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 52/200 (26.00%), Postives = 96/200 (48.00%), Query Frame = 2
Query:   83 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKF-MITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGI 679
            S  GF+GL      MA +LI++G K+  ++++  +V +F   G   +A P D       ++ V+     +  ++ G  G+ K +Q G + +  STI    +  LE         A  +DA +S G++         +  +G     +RA   LS M K + +  G +G G+  K+ N++L G+ ++A  E ++LG+  G+
Sbjct:    2 SLTGFIGLGNMGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVLPSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTI--DQIVSLEVAQAAALLKAEYIDAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNI-VNLGAVGNGTAAKICNNMLLGIQMVAVAETMNLGISMGL 198          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: GLXR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 49/200 (24.50%), Postives = 88/200 (44.00%), Query Frame = 2
Query:   86 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGIHP 685
            K+GF+GL      MA +L R+G+++    I  P+ D+   LG +   +     +    + +++    Q++++ FG  G  K   KG  I+  S+I P   ++  +    N+     +DA VS G      G   I   G     ER +P    + K + +  G  G G   K+ N ++  +++ A  EA+    + G  P
Sbjct:    2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIG-PVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQV--NELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGN-GDGQTCKVANQIIVALNIEAVSEALLFASKAGADP 197          
BLAST of FC920531 vs. ExPASy Swiss-Prot
Match: 3HIDH_DROME (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 52/200 (26.00%), Postives = 91/200 (45.50%), Query Frame = 2
Query:   80 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTENDETACVVDAYVSRGMSEVFNGKFMITTSGRSNAIERARPFLSAMCKTLYIFEGELGAGSKIKMVNDLLEGVHLIASVEAISLGVQFGI 679
            A  +GFVGL     +MA++LI++G+K+  F+IS P  D     G    A   +  K+   ++ ++ +   +D  +   E    G+ K  + I  STI P  ++ L+K  +   + A  +DA VS G+             G        +  L  M K +    G  G G   K+ N+++  + +I   EA++L V+ G+
Sbjct:   28 AKNIGFVGLGNMGANMASNLIKAGHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFVITMLPNNAIVDASY--DEMTADGVNKDTIFIDSSTISPDLVKSLQKKISA--KGARFIDAPVSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKI-THCGVYGMGQAAKLCNNMMLAISMIGVSEAMNLAVRQGL 222          
The following BLAST results are available for this feature:
BLAST of FC920531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
3HIDH_PONAB6.733e-1627.013-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_HUMAN6.733e-1627.013-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
MMSB_PSEAE3.341e-1525.373-hydroxyisobutyrate dehydrogenase OS=Pseudomonas ... [more]
YIHU_SALTY4.825e-1424.38Uncharacterized oxidoreductase yihU OS=Salmonella ... [more]
GARR_ECOLI4.825e-1421.082-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GARR_ECOL64.825e-1421.082-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
3HIDH_CAEEL3.127e-1326.00Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
GLXR_ECOLI5.335e-1324.502-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
3HIDH_DROME3.458e-1226.00Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionC32009F03EF RVDevelop1 Citrus clementina cDNA clone C32009F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920531 ID=FC920531; Name=FC920531; organism=Citrus clementina; type=EST; length=703bp
AAAGTTGTTAATTGATAAATATCAATAACAGAAAATCTGAAACACTTCGT
GCAGCAATTTCACTTTCAATTCGAAAATGGCGTCCAAAGTTGGGTTCGTG
GGATTGGATGAGTACAGCGTGGACATGGCCGCTTCGCTTATTCGCTCTGG
ATACAAAGTCCAAGCGTTTGAGATATCCGATCCCTTGGTAGATAAATTTT
TTATGCTAGGGGGAATCAGAAGTGCAAGCCCTATGGATGCAGGGAAAGAT
GTTTCAGCTTTAGTTGTGGTAATCTCTCATGTAGATCAAATTGATGACAT
ATTCTTTGGTCACGAGGGTGTACTTAAAGGATTACAAAAAGGCGCAGTCA
TAATTCTTCAATCAACTATCTTGCCATCGCATATGCAAAAACTAGAGAAG
ACTTTCACAGAGAATGATGAGACAGCTTGTGTGGTTGATGCATATGTCTC
TAGGGGAATGTCTGAGGTTTTCAATGGAAAATTTATGATTACAACCTCAG
GAAGGTCAAATGCCATTGAGAGGGCGAGACCCTTTCTCTCTGCAATGTGC
AAAACATTATACATTTTTGAGGGTGAACTTGGTGCTGGCAGCAAAATCAA
AATGGTCAATGATCTGCTCGAGGGCGTTCATCTTATTGCTTCTGTAGAGG
CTATTTCTCTTGGAGTTCAATTTGGGATTCATCCATGGGNTCTCTATGAT
ATC
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