FC920538

Overview
NameFC920538
Unique NameFC920538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14094 contig Ccv1_Contig14094:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_STAA2 (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain JH1) GN=SaurJH1_0937 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 54/144 (37.50%), Postives = 87/144 (60.42%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRES 673
            +I  I+ ++V V   ++G  +E ++     A +K++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+++GT F+ S++S A    R++
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPNESIIERLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDA 257          
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAW (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain MW2) GN=MW0803 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 54/144 (37.50%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRES 673
            +I   + ++V V   ++G  SE ++     A +K++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+++GT F+ S++S A    R++
Sbjct:  117 HIDTTIKKQVPVCCFTFGIPSESIIKRLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDA 257          
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_BACSU (Probable 2-nitropropane dioxygenase OS=Bacillus subtilis GN=yrpB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 71/246 (28.86%), Postives = 111/246 (45.12%), Query Frame = 2
Query:   71 IVQAPLGPDISGPEXXXXXXXXXXXXXXRAPDWEAPDYLRDLIRKTRSLTERPFGVGVV----LAFPHNENIK------------------------------AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH------VIGQD--GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRESWLK 682
            I+QAP+   I+ P                A  +  PD L   I++   LT+ PF + V     L  P  + IK                               IL  KV     ++    E+ V E  +AG  ++    + +EA      G+D +++QG EAGGH        G+   GL++L+P   D +    +P+IAAGG++D RG  AAL+LGAQG+++G+ F+   ES AHP +++  L+
Sbjct:   14 IIQAPMAGGITKPRLASAVSNQGALGSL-ASGYLTPDLLEQQIKEIFELTDAPFQINVFVPLGLEMPPKDQIKKWKENIPLANQVNQFTSVQEEWDDFYQKIDLILKYKVKACSFTFDLPPEDAVKELKTAGCCLIGTASTVEEALLMEERGMDIVVLQGSEAGGHRGAFLPSKGESAVGLMALIPQAADAL---SVPVIAAGGMIDHRGVKAALTLGAQGVQIGSAFLICHESNAHPVHKQKILE 255          
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_STAHJ (Probable 2-nitropropane dioxygenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH2032 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.379e-16
Identity = 50/146 (34.25%), Postives = 87/146 (59.59%), Query Frame = 2
Query:  272 IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH------VIGQD----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRESWL 679
            I+ ++  +V V   ++G  S+E++ +   A + ++    + DEA    +AG+D ++ QG EAGGH         Q     G +SL+P +VD +    IP++AAGG++D RG +A+  LGAQG+++GT F+ +EES A+   +++ L
Sbjct:  118 IQTVIKYRVPVCCFTFGIPSKEIIEQLKGAKITLIGTATTVDEAIANEHAGMDIVVAQGSEAGGHRGSFLTTNNQREPLIGTMSLIPQIVDHVS---IPVVAAGGVMDGRGILASQILGAQGVQMGTAFLTTEESGANQLVKQAVL 260          
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_STAS1 (Probable 2-nitropropane dioxygenase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1854 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 49/144 (34.03%), Postives = 84/144 (58.33%), Query Frame = 2
Query:  272 IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH----------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRES 673
            I  ++ + V  +  ++G   + ++ +     +K++    S +EA    +AG+D +I QG EAGGH          +    G +SL+P +VD I   +IP++AAGGI+D RG VA++ LGA+G+++GT F+ S+ES A   Y+ +
Sbjct:  118 IDLVIEKGVPAVSFTFGIPEQTVIEKLKERHIKLIGTATSVEEAIANESAGMDMVIAQGSEAGGHRGAFSETASQLTPLIGTMSLVPQMVDQI---NIPVVAAGGIMDGRGLVASMVLGAEGVQMGTAFLTSDESGASQLYKHA 258          
The following BLAST results are available for this feature:
BLAST of FC920538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
2NPD_STAA21.333e-1937.50Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAW1.740e-1937.50Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_BACSU1.473e-1828.86Probable 2-nitropropane dioxygenase OS=Bacillus su... [more]
2NPD_STAHJ1.379e-1634.25Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAS11.801e-1634.03Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionC32009F11EF RVDevelop1 Citrus clementina cDNA clone C32009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920538 ID=FC920538; Name=FC920538; organism=Citrus clementina; type=EST; length=709bp
GACAGTTCATTTGTATACTTTTCAGTTTACTCTAATGGGTTGGAGAGGAA
TGCTGGGTTTCGAGTATGGGATTGTTCAGGCACCATTGGGACCTGATATT
TCAGGCCCGGAGCTTGTAGCTGCTGTTGCTAATGCCGGTGGTCTTGGTCT
TCTTAGAGCCCCCGATTGGGAAGCACCAGATTACTTGAGGGATCTGATAA
GGAAGACAAGATCATTAACAGAGCGACCATTTGGGGTTGGTGTGGTTCTA
GCATTTCCCCACAACGAAAATATAAAGGCTATACTTAGTGAAAAAGTAGC
AGTTTTGCAAGTTTCCTGGGGTGAATATTCAGAGGAGCTCGTTCTTGAAG
CTCATAGTGCTGGAGTCAAAGTTGTCCCCCAAGTTGGGAGTTTTGACGAA
GCAAGAAAAGCAGTTAACGCAGGTGTAGATGCAATTATAGTCCAAGGACG
TGAAGCTGGGGGCCATGTAATTGGACAGGATGGTTTGATTTCCTTATTGC
CAATGGTGGTTGATCTTATCGGGGATCGAGATATTCCAATAATTGCTGCA
GGTGGTATTGTGGATGCACGTGGTTATGTTGCAGCCCTGTCTCTTGGTGC
TCAAGGCATCCGCTTAGGCACAAGGTTTGTGGCAAGTGAGGAAAGCTATG
CGCATCCTGAGTACAGAGAAAGTTGGTTGAAATGGACAAACTGAATATCA
GATGTATTT
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