FC920540

Overview
NameFC920540
Unique NameFC920540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: STCV_EMENI (Putative sterigmatocystin biosynthesis dehydrogenase stcV OS=Emericella nidulans GN=stcV PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 61/205 (29.76%), Postives = 94/205 (45.85%), Query Frame = 2
Query:  143 RVKLGTQGLEVSKLGLGCMNLSSGYS---SPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK-AFKMLPREKVQIATKFGVVGLRDNGVIVKGT-----PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP------DTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPL 712
            RV     G+ VS L LG M+    ++     V++E   +++   +  G  F DTA+ Y    +E  LG+       R+++ +ATK+ +         +K          +R   EASL +L  DYIDL Y H  D S  +EE +  +  LV  GK+  IG+S+A        +   R HG+      Q  W+   RD E EI+P+
Sbjct:   17 RVLSPLAGIRVSPLCLGTMHFGGQWTRAMGDVTKETAFALLDRFYEAGGNFIDTANFYQGEGSEKWLGEWVASRGNRDELVLATKYTMSYRLTGPEKIKSNFQGSHSKSLRLSVEASLAKLRTDYIDLLYVHMWDFSTSVEEVMQSLHHLVAAGKVLNIGISDAPAWVVAKCNEYARFHGLTRFCVYQGRWACSYRDFEREILPM 221          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB2_XENLA (Voltage-gated potassium channel subunit beta-2 OS=Xenopus laevis GN=kcnab2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 61/196 (31.12%), Postives = 94/196 (47.96%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH------PITAVQMEWSLWTRDIEEEIIP 709
            LG  GL VS LGLG      G    +++E    ++  A+  GI  FDTA+VY     E +LG   K     R  + I TK  +G     + G+  K    ++    +ASL+RL +DY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A+ V       P    Q E+ ++ R+  E  +P
Sbjct:   42 LGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRK----HIIEGLKASLERLQLDYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLP 230          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB3_XENLA (Voltage-gated potassium channel subunit beta-3 OS=Xenopus laevis GN=kcnab3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 61/196 (31.12%), Postives = 94/196 (47.96%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH------PITAVQMEWSLWTRDIEEEIIP 709
            LG  GL VS LGLG       + S +S+E   +++  A+  G+  FDTA+VY     E  LGK  K     R    + TK  +G     + G+  K   + +R     SL+RL +DY+D+ + +R+D + P+EE +  M  ++ +G   Y G S  S   I  A+ V       P    Q E+ L+ R+  E  +P
Sbjct:   76 LGKSGLRVSCLGLGTWVT---FGSQISDEVAENLMTVAYEHGVNLFDTAEVYAAGRAERTLGKILKKKEWRRSSYVVTTKIYWGGQAETERGLSRKHIIEGLRG----SLERLQLDYVDIVFANRMDPNSPMEEIVRAMTFVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKVETQLP 264          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.863e-14
Identity = 60/201 (29.85%), Postives = 95/201 (47.26%), Query Frame = 2
Query:  137 VPRVKLGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH------PITAVQMEWSLWTRDIEEEIIP 709
            +P   LG  GL VS LGLG      G    +S+E    ++  A+  G+  FDTA+VY     E +LG   K     R  + I TK  +G     + G+  K    ++    + SL+RL ++Y+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A+ V       P    Q E+ L+ R+  E  +P
Sbjct:   89 MPHRNLGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRK----HIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLP 282          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB1_HUMAN (Voltage-gated potassium channel subunit beta-1 OS=Homo sapiens GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.863e-14
Identity = 60/201 (29.85%), Postives = 95/201 (47.26%), Query Frame = 2
Query:  137 VPRVKLGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH------PITAVQMEWSLWTRDIEEEIIP 709
            +P   LG  GL VS LGLG      G    +S+E    ++  A+  G+  FDTA+VY     E +LG   K     R  + I TK  +G     + G+  K    ++    + SL+RL ++Y+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A+ V       P    Q E+ L+ R+  E  +P
Sbjct:   89 MPHRNLGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRK----HIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLP 282          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: AAD14_YEAST (Putative aryl-alcohol dehydrogenase AAD14 OS=Saccharomyces cerevisiae GN=AAD14 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.863e-14
Identity = 60/207 (28.99%), Postives = 99/207 (47.83%), Query Frame = 2
Query:  143 RVKLGTQGLEVSKLGLGCMNLS---SGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--AFKMLPREKVQIATKFG------VVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA------HGVHPITAVQMEWSLWTRDIEEEIIPL 712
            RV   T G+ VS L LG  ++    SG+   +++E    ++   +  G    DTA+ Y    +E  +G+  A + L R+++ IATKF        VG   +          +      SL++L  D+ID+ Y H  D    IEE +  +  LV++GK+ Y+G+S+     +  A      HG  P +  Q +W++  RD E +IIP+
Sbjct:   19 RVLSKTAGIRVSPLILGGASIGDAWSGFMGSMNKEQAFELLDAFYEAGGNCIDTANSYQNEESEIWIGEWMASRKL-RDQIVIATKFTGDYKKYEVGGGKSANYCGNHKRSLHVSVRDSLRKLQTDWIDILYIHWWDYMSSIEEVMDSLHILVQQGKVLYLGVSDTPAWVVSAANYYATSHGKTPFSVYQGKWNVLNRDFERDIIPM 224          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.740e-14
Identity = 61/196 (31.12%), Postives = 93/196 (47.45%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH------PITAVQMEWSLWTRDIEEEIIP 709
            LG  GL VS LGLG      G    +S+E    ++  A+  G+  FDTA+VY     E +LG   K     R  + I TK  +G     + G+  K   + +R    ASL+RL ++Y+D+ + +R D + P+EE +  M  ++ +G   Y G S  S   I  A+ V       P    Q E+ L+ R+  E  +P
Sbjct:   76 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAEQLMTIAYESGVNLFDTAEVYAAGKAEVILGNILKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLR----ASLQRLQLEYVDVVFANRPDNNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKVEVQLP 264          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: YGHZ_ECOLI (Uncharacterized protein yghZ OS=Escherichia coli (strain K12) GN=yghZ PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 55/167 (32.93%), Postives = 91/167 (54.49%), Query Frame = 2
Query:  155 GTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQ---NANET---LLGKAFKMLPREKVQIATKFGV---VGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRR 628
            G  GL +  L LG  + + G+ + +  +  I  ++ AF  GIT FD A+ YG    +A E    LL + F    R+++ I+TK G     G   +G    G+  Y+ +  + SLKR+ ++Y+D++Y HRVD + P+EET   +   V+ GK  Y+G+S  SP+  ++
Sbjct:   19 GKSGLRLPALSLGLWH-NFGHVNALESQRAI--LRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAY-RDELIISTKAGYDMWPGPYGSG----GSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQK 177          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: YGHZ_ECO57 (Uncharacterized protein yghZ OS=Escherichia coli O157:H7 GN=yghZ PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 55/167 (32.93%), Postives = 91/167 (54.49%), Query Frame = 2
Query:  155 GTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQ---NANET---LLGKAFKMLPREKVQIATKFGV---VGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRR 628
            G  GL +  L LG  + + G+ + +  +  I  ++ AF  GIT FD A+ YG    +A E    LL + F    R+++ I+TK G     G   +G    G+  Y+ +  + SLKR+ ++Y+D++Y HRVD + P+EET   +   V+ GK  Y+G+S  SP+  ++
Sbjct:   19 GKSGLRLPALSLGLWH-NFGHVNALESQRAI--LRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAY-RDELIISTKAGYDMWPGPYGSG----GSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQK 177          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 60/196 (30.61%), Postives = 94/196 (47.96%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV------HPITAVQMEWSLWTRDIEEEIIP 709
            LG  GL VS LGLG      G    +++E    ++  A+  GI  FDTA+VY     E +LG   K     R  + I TK  +G     + G+  K    ++    +ASL+RL ++Y+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A+ V       P    Q E+ ++ R+  E  +P
Sbjct:   42 LGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRK----HIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLP 230          
The following BLAST results are available for this feature:
BLAST of FC920540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
STCV_EMENI1.285e-1429.76Putative sterigmatocystin biosynthesis dehydrogena... [more]
KCAB2_XENLA1.679e-1431.12Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB3_XENLA2.192e-1431.12Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB1_RABIT2.863e-1429.85Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_HUMAN2.863e-1429.85Voltage-gated potassium channel subunit beta-1 OS=... [more]
AAD14_YEAST2.863e-1428.99Putative aryl-alcohol dehydrogenase AAD14 OS=Sacch... [more]
KCAB1_CHICK3.740e-1431.12Voltage-gated potassium channel subunit beta-1 OS=... [more]
YGHZ_ECOLI4.884e-1432.93Uncharacterized protein yghZ OS=Escherichia coli (... [more]
YGHZ_ECO574.884e-1432.93Uncharacterized protein yghZ OS=Escherichia coli O... [more]
KCAB2_HUMAN4.884e-1430.61Voltage-gated potassium channel subunit beta-2 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32009G01EF RVDevelop1 Citrus clementina cDNA clone C32009G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920540 ID=FC920540; Name=FC920540; organism=Citrus clementina; type=EST; length=712bp
GNAACCAGAATCCTGTCTCATTCTGCTCATTGCTGGAGTTGGAGTCAACT
GTCTCCCTACTTATTGAAACTTGAAAGACACCCAAAACAAAGAAACCAAA
ACTACAGCTTCAAAAATGGCAGAAGAGAAACTCCAAGTTCCAAGGGTGAA
ACTTGGTACCCAAGGCCTCGAGGTTTCAAAGTTGGGGCTGGGATGCATGA
ACCTGAGTTCTGGTTATAGCTCTCCAGTCTCAGAAGAGGATGGCATCTCC
ATGATAAAACATGCTTTCAGTAAAGGAATCACTTTCTTTGATACTGCTGA
TGTGTACGGACAAAATGCTAATGAAACTCTTCTGGGAAAGGCCTTCAAGA
TGTTGCCCAGAGAAAAGGTACAAATAGCCACAAAGTTTGGGGTTGTAGGA
CTAAGAGATAATGGCGTGATCGTGAAGGGCACCCCTGATTACGTGCGCTC
GTGTTGTGAAGCTAGCTTGAAGCGACTTGATGTGGATTACATTGATTTGT
ATTATCAACATAGAGTGGACACATCAGTCCCTATCGAAGAAACCATTGGC
GAAATGAAGAAGCTGGTGGAGGAGGGTAAAATCAAGTACATTGGTTTGTC
TGAGGCTAGCCCAGACACAATTAGGAGAGCACATGGTGTTCATCCCATCA
CAGCTGTACAAATGGAATGGTCCCTCTGGACTCGTGATATCGAGGAAGAG
ATAATACCCCTC
back to top