FC920540

Overview
NameFC920540
Unique NameFC920540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 60/196 (30.61%), Postives = 94/196 (47.96%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH------PITAVQMEWSLWTRDIEEEIIP 709
            LG  GL VS LGLG      G    +++E    ++  A+  GI  FDTA+VY     E +LG   K     R  + I TK  +G     + G+  K    ++    +ASL+RL ++Y+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A+ V       P    Q E+ ++ R+  E  +P
Sbjct:   42 LGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRK----HIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLP 230          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14
Identity = 60/196 (30.61%), Postives = 94/196 (47.96%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH------PITAVQMEWSLWTRDIEEEIIP 709
            LG  GL VS LGLG      G    +++E    ++  A+  GI  FDTA+VY     E +LG   K     R  + I TK  +G     + G+  K    ++    +ASL+RL ++Y+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A+ V       P    Q E+ ++ R+  E  +P
Sbjct:   42 LGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRK----HIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLP 230          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14
Identity = 60/196 (30.61%), Postives = 94/196 (47.96%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH------PITAVQMEWSLWTRDIEEEIIP 709
            LG  GL VS LGLG      G    +++E    ++  A+  GI  FDTA+VY     E +LG   K     R  + I TK  +G     + G+  K    ++    +ASL+RL ++Y+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A+ V       P    Q E+ ++ R+  E  +P
Sbjct:   42 LGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRK----HIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLP 230          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 59/196 (30.10%), Postives = 93/196 (47.45%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH------PITAVQMEWSLWTRDIEEEIIP 709
            LG  GL VS LGLG      G    +S+E    ++  A+  G+  FDTA+VY     E +LG   K     R  + I TK  +G     + G+  K    ++    + SL+RL ++Y+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A+ V       P    Q E+ L+ R+  E  +P
Sbjct:   76 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRK----HIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLP 264          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB1_MUSPU (Voltage-gated potassium channel subunit beta-1 OS=Mustela putorius GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 59/196 (30.10%), Postives = 93/196 (47.45%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH------PITAVQMEWSLWTRDIEEEIIP 709
            LG  GL VS LGLG      G    +S+E    ++  A+  G+  FDTA+VY     E +LG   K     R  + I TK  +G     + G+  K    ++    + SL+RL ++Y+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A+ V       P    Q E+ L+ R+  E  +P
Sbjct:   83 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRK----HIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLP 271          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB1_MOUSE (Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 59/196 (30.10%), Postives = 93/196 (47.45%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH------PITAVQMEWSLWTRDIEEEIIP 709
            LG  GL VS LGLG      G    +S+E    ++  A+  G+  FDTA+VY     E +LG   K     R  + I TK  +G     + G+  K    ++    + SL+RL ++Y+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A+ V       P    Q E+ L+ R+  E  +P
Sbjct:   76 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRK----HIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLP 264          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB1_BOVIN (Voltage-gated potassium channel subunit beta-1 OS=Bos taurus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 59/196 (30.10%), Postives = 93/196 (47.45%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH------PITAVQMEWSLWTRDIEEEIIP 709
            LG  GL VS LGLG      G    +S+E    ++  A+  G+  FDTA+VY     E +LG   K     R  + I TK  +G     + G+  K    ++    + SL+RL ++Y+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A+ V       P    Q E+ L+ R+  E  +P
Sbjct:   76 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRK----HIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLP 264          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: YP088_YEAST (Putative aryl-alcohol dehydrogenase YPL088W OS=Saccharomyces cerevisiae GN=YPL088W PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 62/218 (28.44%), Postives = 102/218 (46.79%), Query Frame = 2
Query:  137 VPRVKLGTQGLEVSKLGLGCMNLSSGYSSPVSEEDG---ISMIKHAFSKGITFFDTADVYGQNANETLLGK--AFKMLPREKVQIATKF-----GVVGLRDNGVIVKG-----------TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIP 709
            V +V+LG  GL++S + +GCM+  S   +    ED      ++KH + KG+  FDTAD Y    +E ++ +   +  + RE V I TK        + L  N  + +            +  ++ +  E S+KRL   YIDL   HR+D   P++E +  +  +VE G ++YIG S       A        +G     + Q  ++L  R+ E E+IP
Sbjct:    4 VKQVRLGNSGLKISPIVIGCMSYGSKKWADWVIEDKTQIFKIMKHCYDKGLRTFDTADFYSNGLSERIIKEFLEYYSIKRETVVIMTKIYFPVDETLDLHHNFTLNEFEELDLSNQRGLSRKHIIAGVENSVKRLGT-YIDLLQIHRLDHETPMKEIMKALNDVVEAGHVRYIGASSMLATEFAELQFTADKYGWFQFISSQSYYNLLYREDERELIP 220          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: ARK74_HUMAN (Aflatoxin B1 aldehyde reductase member 4 OS=Homo sapiens GN=AKR7L PE=2 SV=5)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 63/184 (34.24%), Postives = 90/184 (48.91%), Query Frame = 2
Query:  188 LGCMNLSSGYSSPVSEEDGISMIKHAF-SKGITFFDTADVYGQNANETLLGKAFKMLPRE--KVQIATKFGV-VGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIP 709
            LG M +     +P S     + +  AF  +G T  DTA +Y    +ET+LG     +     +V+IATK    +G   N +     PD VRS  E SLKRL    +DL+Y H  D S P+EET+    +L +EGK   +GLS       A   T+ +++G    T  Q  +S  TR +E E+ P
Sbjct:   14 LGAMEMGRRMDAPTS-----AAVTRAFLERGHTEIDTAFLYSDGQSETILGGLGLRMGSSDCRVKIATKANPWIG---NSL----KPDSVRSQLETSLKRLQCPUVDLFYLHAPDHSAPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCKSNGWILPTVYQGMYSATTRQVETELFP 185          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: ARK73_HUMAN (Aflatoxin B1 aldehyde reductase member 3 OS=Homo sapiens GN=AKR7A3 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 57/181 (31.49%), Postives = 85/181 (46.96%), Query Frame = 2
Query:  188 LGCMNLSSGYSSPVSEEDGISMIKHAF-SKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIP 709
            LG M +     +P S     + +  AF  +G T  DTA VY +  +ET+LG     L     ++      + L  N +     PD +R   E SLKRL    +DL+Y H  D S P+EET+    +L +EGK   +GLS       A   T+ +++G    T  Q  ++  TR +E E+ P
Sbjct:   14 LGAMEMGRRMDAPTS-----AAVTRAFLERGHTEIDTAFVYSEGQSETILGGLGLRLGGSDCRVKIDTKAIPLFGNSL----KPDSLRFQLETSLKRLQCPRVDLFYLHMPDHSTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCKSNGWILPTVYQGMYNAITRQVETELFP 185          
The following BLAST results are available for this feature:
BLAST of FC920540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
KCAB2_BOVIN4.884e-1430.61Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_RAT6.379e-1430.61Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE6.379e-1430.61Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_RAT1.088e-1330.10Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MUSPU1.088e-1330.10Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MOUSE1.088e-1330.10Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_BOVIN1.088e-1330.10Voltage-gated potassium channel subunit beta-1 OS=... [more]
YP088_YEAST2.424e-1328.44Putative aryl-alcohol dehydrogenase YPL088W OS=Sac... [more]
ARK74_HUMAN4.135e-1334.24Aflatoxin B1 aldehyde reductase member 4 OS=Homo s... [more]
ARK73_HUMAN9.211e-1331.49Aflatoxin B1 aldehyde reductase member 3 OS=Homo s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32009G01EF RVDevelop1 Citrus clementina cDNA clone C32009G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920540 ID=FC920540; Name=FC920540; organism=Citrus clementina; type=EST; length=712bp
GNAACCAGAATCCTGTCTCATTCTGCTCATTGCTGGAGTTGGAGTCAACT
GTCTCCCTACTTATTGAAACTTGAAAGACACCCAAAACAAAGAAACCAAA
ACTACAGCTTCAAAAATGGCAGAAGAGAAACTCCAAGTTCCAAGGGTGAA
ACTTGGTACCCAAGGCCTCGAGGTTTCAAAGTTGGGGCTGGGATGCATGA
ACCTGAGTTCTGGTTATAGCTCTCCAGTCTCAGAAGAGGATGGCATCTCC
ATGATAAAACATGCTTTCAGTAAAGGAATCACTTTCTTTGATACTGCTGA
TGTGTACGGACAAAATGCTAATGAAACTCTTCTGGGAAAGGCCTTCAAGA
TGTTGCCCAGAGAAAAGGTACAAATAGCCACAAAGTTTGGGGTTGTAGGA
CTAAGAGATAATGGCGTGATCGTGAAGGGCACCCCTGATTACGTGCGCTC
GTGTTGTGAAGCTAGCTTGAAGCGACTTGATGTGGATTACATTGATTTGT
ATTATCAACATAGAGTGGACACATCAGTCCCTATCGAAGAAACCATTGGC
GAAATGAAGAAGCTGGTGGAGGAGGGTAAAATCAAGTACATTGGTTTGTC
TGAGGCTAGCCCAGACACAATTAGGAGAGCACATGGTGTTCATCCCATCA
CAGCTGTACAAATGGAATGGTCCCTCTGGACTCGTGATATCGAGGAAGAG
ATAATACCCCTC
back to top