FC920540

Overview
NameFC920540
Unique NameFC920540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: ARK72_HUMAN (Aflatoxin B1 aldehyde reductase member 2 OS=Homo sapiens GN=AKR7A2 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 60/182 (32.97%), Postives = 89/182 (48.90%), Query Frame = 2
Query:  188 LGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPRE--KVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIP 709
            LG M +     +P S     + ++    +G T  DTA +Y    +ET+LG     L     +V+IATK        +G  +K  PD VRS  E SLKRL    +DL+Y H  D   P+EET+   ++L +EGK   +GLS       A   T+ +++G    T  Q  ++  TR +E E+ P
Sbjct:   42 LGTMEMGRRMDAPASA----AAVRAFLERGHTELDTAFMYSDGQSETILGGLGLGLGGGDCRVKIATKANPW----DGKSLK--PDSVRSQLETSLKRLQCPQVDLFYLHAPDHGTPVEETLHACQRLHQEGKFVELGLSNYASWEVAEICTLCKSNGWILPTVYQGMYNATTRQVETELFP 213          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: YDHF_ECOLI (Oxidoreductase ydhF OS=Escherichia coli (strain K12) GN=ydhF PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 2
Query:  137 VPRVKLGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATKFGVVGL-RDNGVIVKGTPD--YVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP 613
            V R+ +  QG E S+  +G   L       +S    +S I+     G+T  D AD+YG    E   G+A K+ P  RE+++I +K G+    R+  VI     D  ++    E SL  L  D++DL   HR D  +  +E     K L + GK+++ G+S  +P
Sbjct:    2 VQRITIAPQGPEFSRFVMGYWRLMDWN---MSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNFTP 162          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB3_RAT (Voltage-gated potassium channel subunit beta-3 OS=Rattus norvegicus GN=Kcnab3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 52/167 (31.14%), Postives = 79/167 (47.31%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV 640
            LG  GL VS LGLG       + S +S+E    ++  A+  G+  FDTA+VY     E  LG   K     R    I TK  +G     + G+  K    ++    + SL RL ++Y+D+ + +R D S P+EE +  M  ++ +G   Y G S  S   I  A+ +
Sbjct:   83 LGKSGLRVSCLGLGTWVT---FGSQISDETAEDLLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRK----HIIEGLQGSLDRLQLEYVDIVFANRSDPSSPMEEIVRAMTYVINQGLALYWGTSRWSAAEIMEAYSM 242          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: YEAE_ECOLI (Uncharacterized protein yeaE OS=Escherichia coli (strain K12) GN=yeaE PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 49/158 (31.01%), Postives = 80/158 (50.63%), Query Frame = 2
Query:  245 ISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---ASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIP 709
            ++ ++     G+T  DTA++Y     E ++G+A   L REKV + +K           I         + CEASL+RL+ DY+DLY  H    S   EET+  M+KL+ +GKI+  G+S    A    + +  G +     Q+ + L +R IE +++P
Sbjct:   35 VAALRAGIELGLTLIDTAEMYADGGAEKVVGEALTGL-REKVFLVSKVYPWNAGGQKAI---------NACEASLRRLNTDYLDLYLLH-WSGSFAFEETVAAMEKLIAQGKIRRWGVSNLDYADMQELWQLPGGNQCATNQVLYHLGSRGIEYDLLP 181          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: Y2320_MYCBO (Uncharacterized oxidoreductase Mb2320 OS=Mycobacterium bovis GN=Mb2320 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 54/185 (29.19%), Postives = 91/185 (49.19%), Query Frame = 2
Query:  170 EVSKLGLGCMNLSS---GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIP 709
            +VS++GLG     S   GY    +      ++K A + G+T FDTA++YG   +E +LG+A     R +V +A+K            V   P  +++   AS +RL ++ I LY  H+ +  VP    +  M+ L++ G I   G+S  S    R+A      P+ + Q+ +SL   D  E+++P
Sbjct:   11 QVSRIGLGTWQFGSREWGYGDRYATGAARDIVKRARALGVTLFDTAEIYGLGKSERILGEALGD-DRTEVVVASKV---------FPVAPFPAVIKNRERASARRLQLNRIPLYQIHQPNPVVPDSVIMPGMRDLLDSGDIGAAGVSNYSLARWRKADAALGRPVVSNQVHFSLAHPDALEDLVP 185          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: Y2298_MYCTU (Uncharacterized oxidoreductase Rv2298/MT2355 OS=Mycobacterium tuberculosis GN=Rv2298 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 54/185 (29.19%), Postives = 91/185 (49.19%), Query Frame = 2
Query:  170 EVSKLGLGCMNLSS---GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIP 709
            +VS++GLG     S   GY    +      ++K A + G+T FDTA++YG   +E +LG+A     R +V +A+K            V   P  +++   AS +RL ++ I LY  H+ +  VP    +  M+ L++ G I   G+S  S    R+A      P+ + Q+ +SL   D  E+++P
Sbjct:   11 QVSRIGLGTWQFGSREWGYGDRYATGAARDIVKRARALGVTLFDTAEIYGLGKSERILGEALGD-DRTEVVVASKV---------FPVAPFPAVIKNRERASARRLQLNRIPLYQIHQPNPVVPDSVIMPGMRDLLDSGDIGAAGVSNYSLARWRKADAALGRPVVSNQVHFSLAHPDALEDLVP 185          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: AAD4_YEAST (Probable aryl-alcohol dehydrogenase AAD4 OS=Saccharomyces cerevisiae GN=AAD4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 48/175 (27.43%), Postives = 82/175 (46.86%), Query Frame = 2
Query:  227 VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP-REKVQIATKFG------VVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA------HGVHPITAVQMEWSLWTRDIEEEIIPL 712
            +++E    ++   +  G    DTA+ Y    +E  +G+  K    R+++ IATKF        VG   +          +      SL++L  D+ID+ Y H  D    IEE +  +  LV++GK+ Y+G+S+     +  A      HG  P +  Q +W++  RD E +IIP+
Sbjct:    4 MNKEQAFELLDAFYEAGGNCIDTANSYQNEESEIWIGEWMKSRKLRDQIVIATKFTGDYKKYEVGGGKSANYCGNHKHSLHVSVRDSLRKLQTDWIDILYVHWWDYMSSIEEVMDSLHILVQQGKVLYLGVSDTPAWVVSAANYYATSHGKTPFSIYQGKWNVLNRDFERDIIPM 178          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: KCAB3_HUMAN (Voltage-gated potassium channel subunit beta-3 OS=Homo sapiens GN=KCNAB3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 58/196 (29.59%), Postives = 88/196 (44.90%), Query Frame = 2
Query:  152 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH------PITAVQMEWSLWTRDIEEEIIP 709
            LG  GL VS LGLG       + S +S+E    ++  A+  G+  FDTA+VY     E  LG   K     R    I TK  +G     + G+  K   + +R     SL+RL + Y+D+ + +R D + P+EE +  M  ++ +G   Y G S      I  A+ +       P    Q E  L+ R+  E  +P
Sbjct:   83 LGKSGLRVSCLGLGTWVT---FGSQISDETAEDVLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLRG----SLERLQLGYVDIVFANRSDPNCPMEEIVRAMTYVINQGLALYWGTSRWGAAEIMEAYSMARQFNLIPPVCEQAEHHLFQREKVEMQLP 271          
BLAST of FC920540 vs. ExPASy Swiss-Prot
Match: ARK73_RAT (Aflatoxin B1 aldehyde reductase member 3 OS=Rattus norvegicus GN=Akr7a3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 57/160 (35.62%), Postives = 78/160 (48.75%), Query Frame = 2
Query:  254 IKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPRE--KVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIP 709
            ++    +G T  DTA VY    +ET+LG     L R   KV+IATK   +     G  +K  P  VR   E SLKRL    +DL+Y H  D   PIEET+    +L +EGK   +GLS       A   T+ + +G    T  Q  ++  TR +E E+ P
Sbjct:   28 VRAFLQRGHTEIDTAFVYANGQSETILGDLGLGLGRSGCKVKIATKAAPMF----GKTLK--PADVRFQLETSLKRLQCPRVDLFYLHFPDHGTPIEETLQACHQLHQEGKFVELGLSNYVSWEVAEICTLCKKNGWIMPTVYQGMYNAITRQVETELFP 181          
The following BLAST results are available for this feature:
BLAST of FC920540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
ARK72_HUMAN9.211e-1332.97Aflatoxin B1 aldehyde reductase member 2 OS=Homo s... [more]
YDHF_ECOLI4.571e-1230.49Oxidoreductase ydhF OS=Escherichia coli (strain K1... [more]
KCAB3_RAT4.571e-1231.14Voltage-gated potassium channel subunit beta-3 OS=... [more]
YEAE_ECOLI1.018e-1131.01Uncharacterized protein yeaE OS=Escherichia coli (... [more]
Y2320_MYCBO1.018e-1129.19Uncharacterized oxidoreductase Mb2320 OS=Mycobacte... [more]
Y2298_MYCTU1.018e-1129.19Uncharacterized oxidoreductase Rv2298/MT2355 OS=My... [more]
AAD4_YEAST1.330e-1127.43Probable aryl-alcohol dehydrogenase AAD4 OS=Saccha... [more]
KCAB3_HUMAN1.737e-1129.59Voltage-gated potassium channel subunit beta-3 OS=... [more]
ARK73_RAT2.963e-1135.63Aflatoxin B1 aldehyde reductase member 3 OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionC32009G01EF RVDevelop1 Citrus clementina cDNA clone C32009G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920540 ID=FC920540; Name=FC920540; organism=Citrus clementina; type=EST; length=712bp
GNAACCAGAATCCTGTCTCATTCTGCTCATTGCTGGAGTTGGAGTCAACT
GTCTCCCTACTTATTGAAACTTGAAAGACACCCAAAACAAAGAAACCAAA
ACTACAGCTTCAAAAATGGCAGAAGAGAAACTCCAAGTTCCAAGGGTGAA
ACTTGGTACCCAAGGCCTCGAGGTTTCAAAGTTGGGGCTGGGATGCATGA
ACCTGAGTTCTGGTTATAGCTCTCCAGTCTCAGAAGAGGATGGCATCTCC
ATGATAAAACATGCTTTCAGTAAAGGAATCACTTTCTTTGATACTGCTGA
TGTGTACGGACAAAATGCTAATGAAACTCTTCTGGGAAAGGCCTTCAAGA
TGTTGCCCAGAGAAAAGGTACAAATAGCCACAAAGTTTGGGGTTGTAGGA
CTAAGAGATAATGGCGTGATCGTGAAGGGCACCCCTGATTACGTGCGCTC
GTGTTGTGAAGCTAGCTTGAAGCGACTTGATGTGGATTACATTGATTTGT
ATTATCAACATAGAGTGGACACATCAGTCCCTATCGAAGAAACCATTGGC
GAAATGAAGAAGCTGGTGGAGGAGGGTAAAATCAAGTACATTGGTTTGTC
TGAGGCTAGCCCAGACACAATTAGGAGAGCACATGGTGTTCATCCCATCA
CAGCTGTACAAATGGAATGGTCCCTCTGGACTCGTGATATCGAGGAAGAG
ATAATACCCCTC
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