FC920541

Overview
NameFC920541
Unique NameFC920541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12205 contig Ccv1_Contig12205:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_HHV1K (Ribonucleoside-diphosphate reductase small chain OS=Human herpesvirus 1 (strain KOS) GN=UL40 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.361e-16
Identity = 59/205 (28.78%), Postives = 98/205 (47.80%), Query Frame = 3
Query:  102 PNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETV--PCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            P+P+R+  +  Q P I  +   +  + W   E+    D      L+  E  F   + AF +A+D +V ENL G      +  +   +Y  Q  IE  HS +Y+++      ++D+  R + A  T+  P +  K  W    +    +  E+ I    +EGIFF+ SF AI +L+   L+     SN+LISRDE +H   +C +Y+
Sbjct:   32 PDPERY-FYTSQCPDINHLRSLSILNRWLETELVFVGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTENLGG-LSGLFEQKDILHYYVEQECIEVAHSRVYNIIQLVLFHNNDQARREYVA-GTINHPAIRAKVDWLEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYN 233          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_EHV1B (Ribonucleoside-diphosphate reductase small chain OS=Equine herpesvirus 1 (strain Ab4p) GN=20 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 56/191 (29.32%), Postives = 93/191 (48.69%), Query Frame = 3
Query:  141 PQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLL-LETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            P I  +   + A+ W   ++ +S DL+    LT  E+ F   + AF +A+D +V  NL G         +   +Y  Q +IE  HS +YS + L  +  D+  + R   +I     + +K  W    +    + AE+ I    +EG+FF+ SF +I +L+   L      SN+LISRDE +H   +C +Y+
Sbjct:   28 PDIEHLRSLSVANRWLDTDLPISDDLKDVAKLTPAEREFYRFLFAFLSAADDLVNLNL-GDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDAAARARYVASIIGDAAIGRKVAWLQAKVRECGSVAEKYILMILIEGLFFASSFASIAYLRTHNLFVVTCQSNDLISRDEAIHTRASCCIYN 217          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_BHV1C (Ribonucleoside-diphosphate reductase small chain OS=Bovine herpesvirus 1.1 (strain Cooper) GN=UL40 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 55/197 (27.92%), Postives = 93/197 (47.21%), Query Frame = 3
Query:  126 FPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLA--GRFMTEVQVAEARAFYGFQIAIENIHSEMYSLL-LETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 707
            +  + P +  +   + A+ W   E  L+ D +    L+  E  F   + AF +A+D +V  NL       T+  +     +Y  Q +IE +HS +YS + L  +  D+  +          P V +K  W    +  +E+ AE+ +    +EGIFFS SF AI +L+   L      +N+LISRDE +H   +C ++
Sbjct:   18 YETECPDLDHLRSLSVANRWLETEFPLADDAKDVARLSGAELEFYRFLFAFLSAADDLVNVNLGDLSELFTQKDILH---YYIEQESIEVVHSRVYSAIQLLLFRNDAVARAGYVEGALGDPAVRRKVDWLERRVAAAESVAEKYVLMILIEGIFFSSSFAAIAYLRTHNLFVVTCQTNDLISRDEAVHTAASCCIF 211          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_EHV4 (Ribonucleoside-diphosphate reductase small chain OS=Equine herpesvirus 4 (strain 1942) PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15
Identity = 54/191 (28.27%), Postives = 94/191 (49.21%), Query Frame = 3
Query:  141 PQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLL-LETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            P I  +   + A+ W   ++ +S DL+    L   E+ F   + AF +A+D +V  NL G         +   +Y  Q +IE  HS +YS + L  +  D+  + R   ++     +  K +W    +   ++ AE+ I    +EG+FF+ SF +I +L+   L      SN+LISRDE +H + +C +Y+
Sbjct:   27 PDIEHLRLLSVANRWLDTDLPISDDLKDVAKLAPAEREFYRFLFAFLSAADDLVNLNL-GDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDATARARYVASVVKDVAIDLKVSWLQAKVRECKSVAEKYILMILIEGVFFASSFASIAYLRTHNLFVVTCQSNDLISRDEAIHTNASCCIYN 216          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_SUHVK (Ribonucleoside-diphosphate reductase small chain OS=Suid herpesvirus 1 (strain Kaplan) GN=RR2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 54/195 (27.69%), Postives = 92/195 (47.18%), Query Frame = 3
Query:  135 QYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAG--RFMTEVQVAEARAFYGFQIAIENIHSEMYSLL-LETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            Q P +  +   + A+ W   ++ L  D +   AL+  E  F   + AF +A+D +V  NL       T+  +     +Y  Q  IE +HS +YS + L  +  D+  + R   A      + +K  W  + +    + AE+ +    +EGIFF+ SF +I +L+   L      SN+ ISRDE +H   +C +Y+
Sbjct:    8 QCPDMDHLRSLSVANRWLETDLPLGDDAKDVAALSEPELEFYRFLFAFLSAADDLVNVNLGSLSELFTQKDILH---YYIEQECIEVVHSRVYSAIQLMLFRGDAAARERYVRAALRDEAIRRKVEWLDSRVAECASVAEKYLLMILIEGIFFASSFASISYLRTHNLFVVTCQSNDFISRDEAIHTSASCCIYN 199          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_SHV21 (Ribonucleoside-diphosphate reductase small chain OS=Saimiriine herpesvirus 2 (strain 11) GN=60 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 51/189 (26.98%), Postives = 94/189 (49.74%), Query Frame = 3
Query:  153 EMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHA-IETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            E+ K+   + W   +V L  D+   + L   +  F   +  F   ++ +V  N+    +++    +   +Y  Q+A+ENIH ++Y+ +L    K++  +   +   I     + +K  W    +  +   AE+++ F  VEGIFF  SF +I   + RG+M G+  +N+ I+RDE LH   A LLY+ +
Sbjct:   18 ELTKETWKNRWFPSQVPLQGDVCCVDMLNERDLEFYKFLFTFLGMAEKLVNINIED-LLSQFDSHDISHYYAEQMAMENIHGKVYANILNMLFKNNITEVYSYACDIMNDSALQEKLRWLNGRVTEASDKAEKILLFLLVEGIFFISSFFSIGLFRVRGIMNGICLANDYIARDEMLHTSAAALLYNTM 205          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: YVFB_VACCC (Uncharacterized 8.3 kDa protein OS=Vaccinia virus (strain Copenhagen) GN=F ORF B PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = -3
Query:  542 NKLYN-RHAKSQWRPSSREINSFENVNPGINPRFLSQNIAQKLPEKKIPSTQANAINLS 715
            NK  N +HAKSQ RPSS  I+S ENV+PGI PRFLSQN+    PEKKIPST A AI+LS
Sbjct:   19 NKCLNIKHAKSQCRPSSLLISSLENVSPGIRPRFLSQNMEANDPEKKIPSTAAKAISLS 77          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_TREPA (Ribonucleoside-diphosphate reductase subunit beta OS=Treponema pallidum GN=nrdB PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 51/191 (26.70%), Postives = 89/191 (46.60%), Query Frame = 3
Query:  132 IQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENL--AGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKK---ATWALNWIDGSETFAERLIAFA--CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLH 683
            ++YP + + Y++A  +FW  EE+++S D++ +  L+A EK     +L+F    D I   NL   G+++T  ++        FQ   E +HS+ YS +L+T     +  + L+   +    +A+          + D     A   +A A   +EGI+F   F   + L +   MPG       I+RDE  H
Sbjct:   41 MKYPWVSKWYRQAMNNFWIPEEINMSSDVQDYRNLSAIEKTAYDKILSFLIFLDSIQTANLPNIGQYITANEINLCLTIQAFQ---EAVHSQSYSYMLDTICSPEERNDILYQWKDDEHLLARNKFIGNLYNEFQDDKSVLALLKVAIANYVLEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTH 228          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_CHLTR (Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia trachomatis GN=nrdB PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 50/206 (24.27%), Postives = 92/206 (44.66%), Query Frame = 3
Query:  123 MFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEA--LTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWAL-------------NWIDGSETFAERLIAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 692
            + PI+Y   WE Y    A+ W   E+ + +D+  W++  L+ DE+  +   L FF+ ++ +V  N+       V   EAR +   Q   E +H+  +  + E+   D  E   +F+A      +  K  + +             + ++G + F + L+ +  + EGIFF   F  I    ++  M G+    + I RDE +H +F
Sbjct:   31 LVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKE---IFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNF 233          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_CHLMU (Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia muridarum GN=nrdB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 50/206 (24.27%), Postives = 92/206 (44.66%), Query Frame = 3
Query:  123 MFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEA--LTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWAL-------------NWIDGSETFAERLIAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 692
            + PI+Y   WE Y    A+ W   E+ + +D+  W++  L+ DE+  +   L FF+ ++ +V  N+       V   EAR +   Q   E +H+  +  + E+   D  E   +F+A      +  K  + +             + ++G + F + L+ +  + EGIFF   F  I    ++  M G+    + I RDE +H +F
Sbjct:   31 LVPIKYKWAWEHYLNGCANNWLPTEISMGKDIELWKSNVLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKE---IFNAYNERASIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFIKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMVGIGEQYQYILRDETIHLNF 233          
The following BLAST results are available for this feature:
BLAST of FC920541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RIR2_HHV1K2.361e-1628.78Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_EHV1B5.261e-1629.32Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_BHV1C1.172e-1527.92Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_EHV41.531e-1528.27Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_SUHVK1.999e-1527.69Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_SHV219.921e-1526.98Ribonucleoside-diphosphate reductase small chain O... [more]
YVFB_VACCC9.286e-1367.80Uncharacterized 8.3 kDa protein OS=Vaccinia virus ... [more]
RIR2_TREPA2.702e-1226.70Ribonucleoside-diphosphate reductase subunit beta ... [more]
RIR2_CHLTR3.529e-1224.27Ribonucleoside-diphosphate reductase subunit beta ... [more]
RIR2_CHLMU3.529e-1224.27Ribonucleoside-diphosphate reductase subunit beta ... [more]

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Properties
Property NameValue
Genbank descriptionC32009G02EF RVDevelop1 Citrus clementina cDNA clone C32009G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920541 ID=FC920541; Name=FC920541; organism=Citrus clementina; type=EST; length=717bp
GGTCCTCATCAACCAAAGAAATAGAAAAAAATATCTCTCTATTCTCCCGA
ATTAGTGCGCTTACCAAAATGCCCTCGATTCCTGAAGAGCCGCTTCTAGC
CCCAAATCCCGATCGATTTTGCATGTTCCCGATTCAGTACCCACAAATTT
GGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCTGAGGAAGTT
GATCTTTCGCAAGATCTCCGCCACTGGGAGGCCCTAACCGCTGACGAGAA
GCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCG
TCCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAG
GCGCGTGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGA
AATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCGACGAAAAGA
ACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCC
ACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTTCGCGGAGAGATT
AATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCG
CGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCAGGATTAACATTCTCA
AACGAGTTGATCTCTCGAGATGAGGGTCTCCACTGCGATTTCGCGTGCCT
GTTGTACAGTTTATTGA
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