FC920544

Overview
NameFC920544
Unique NameFC920544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10346 contig Ccv1_Contig10346:240..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920544 vs. ExPASy Swiss-Prot
Match: Y5830_ARATH (Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 50/173 (28.90%), Postives = 83/173 (47.98%), Query Frame = 2
Query:   11 NDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKG--ITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSI 523
            N  C +W GV+C  +   V  + L G               + G I P    L +L SL +   +   ++G +P  I S+P L  + L  N  SG++P  + R  +L +L+++ N+ +G IP +  NL  L  L L+NN++SGP+P                N ++G+IPS++
Sbjct:   71 NHICKSWVGVTCTSDGTSVHALRLPGIG-------------LLGPIPPNT--LGKLESLRILSLRSNLLSGNLPPDIHSLPSLDYIYLQHNNFSGEVPSFVSR--QLNILDLSFNSFTGKIPATFQNLKQLTGLSLQNNKLSGPVPNL--DTVSLRRLNLSNNHLNGSIPSAL 224          
BLAST of FC920544 vs. ExPASy Swiss-Prot
Match: Y1848_ARATH (Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 53/167 (31.74%), Postives = 83/167 (49.70%), Query Frame = 2
Query:   26 NWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVC-KLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSI 523
            NW GV C  E++RV  + L G +             ++G I   +   LT+L +L+L     ++G +P+ +S+   LR L L GN+ SG+IP  +  L  L  LN+A N+ +G I     NL+ L  L L NN++SG IP                N ++G+IP ++
Sbjct:   63 NWAGVKC--ESNRVTALRLPGVA-------------LSGDIPEGIFGNLTQLRTLSLR-LNALSGSLPKDLSTSSNLRHLYLQGNRFSGEIPEVLFSLSHLVRLNLASNSFTGEISSGFTNLTKLKTLFLENNQLSGSIP---DLDLPLVQFNVSNNSLNGSIPKNL 210          
BLAST of FC920544 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 51/174 (29.31%), Postives = 86/174 (49.43%), Query Frame = 2
Query:   29 WYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADL 550
            W GV C  E+ RV  + L G               ++G +  A+  LT+L +L+   +  + G +P   +++  LR L L GN  SG+IP  +  L  +  +N+A NN  G IP ++ + + L  L L++N+++GPIP                NQ++G+IP  +S + + A L
Sbjct:   55 WGGVQC--ESGRVTALRLPGVG-------------LSGPLPIAIGNLTKLETLSFR-FNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIP---EIKIKLQQFNVSSNQLNGSIPDPLSGMPKTAFL 209          
BLAST of FC920544 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 48/150 (32.00%), Postives = 74/150 (49.33%), Query Frame = 2
Query:    8 GNDCCHNWYGVSCDQ---ETHRVADINLRGESEDPI--FQRAHRTGYMTGYISPAVCKLTRLSSLTL-ADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPI 439
            G+ C  +W GV C+    ET  +   NL GE    +  F       +   +I  ++     +S   L       TG IP  +SS+  L ++ L  N LSG IP     L  +  ++++ NN+SG +PPS+ NLS+L  L L+NN +SG +
Sbjct:   61 GDPCGESWQGVLCNASQVETIILISANLGGELGVGLNMFTSLKAMDFSNNHIGGSIPSTLPVSLQNLFLSGNNFTGTIPESLSSLKSLSVMSLNNNLLSGKIPDVFQDLGLMINIDLSSNNLSGPLPPSMQNLSTLTSLLLQNNHLSGEL 210          
BLAST of FC920544 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  260 LDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIAN-LSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGK 601
            L L   +L+G+IP  +     L  L+++ N++SG+IP  I + L  L+ LDL  N++ G IP  +             N++SG+IPS +S + RL  L L+ N +SG IP+ L +
Sbjct:   77 LQLQSMQLAGEIPESLKLCRSLQSLDLSGNDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIVECKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGNDLSGTIPSELAR 191          

HSP 2 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 44/131 (33.59%), Postives = 67/131 (51.15%), Query Frame = 2
Query:   62 RVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISS-IPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSV 451
            ++  ++   E E+ I     ++  + G I  ++     L SL L+    ++G IP  I S +P+L  LDL GNKL G IP  I     L  L ++DN +SG+IP  ++ L  L  L L  N +SG IP  +
Sbjct:   60 KLTGVSCWNEKENRIISLQLQSMQLAGEIPESLKLCRSLQSLDLSG-NDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIVECKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGNDLSGTIPSEL 189          
BLAST of FC920544 vs. ExPASy Swiss-Prot
Match: Y1699_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g69990 OS=Arabidopsis thaliana GN=At1g69990 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 48/150 (32.00%), Postives = 72/150 (48.00%), Query Frame = 2
Query:  149 SPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIAN-LSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASL 595
            S ++CKLT +S      W      I            L L   +LSG IP  +     L  L+++ N+ SG IP  I + L  L+ LDL  N++SG IP  +             N+++G+IPS ++ + RL  L L+ N +SG IP+ L
Sbjct:   48 SSSICKLTGVSC-----WNAKENRILS----------LQLQSMQLSGQIPESLKLCRSLQSLDLSFNDFSGLIPSQICSWLPYLVTLDLSGNKLSGSIPSQIVDCKFLNSLALNQNKLTGSIPSELTRLNRLQRLSLADNDLSGSIPSEL 182          
BLAST of FC920544 vs. ExPASy Swiss-Prot
Match: Y1143_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 50/155 (32.26%), Postives = 77/155 (49.68%), Query Frame = 2
Query:  140 GYISPAVCKLTRLSS----LTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPAS 592
            G   P   ++ RLSS    L L+    I+G IP+ ISS+  LR L L  N  +G +P D+  L  L  LN+  N +   + PS+A  S+L+ + L+NN     IP  +             N+ +G+IP  +  +  L +L L+ N +SG +P S
Sbjct:  118 GISGPLPSQIIRLSSSLQSLNLSS-NFISGNIPKEISSLKNLRSLVLANNLFNGSVP-DLRGLSNLQELNLGGNKLGPEVVPSLA--SNLITISLKNNSFGSKIPEQIKKLNKLQSLDLSSNKFTGSIPRFLLSLPSLQNLSLAQNLLSGSLPNS 268          
BLAST of FC920544 vs. ExPASy Swiss-Prot
Match: Y5720_ARATH (Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 42/120 (35.00%), Postives = 61/120 (50.83%), Query Frame = 2
Query:  233 ISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPAS 592
            +S +  LR+L L  N L G IP D+  L  L  L ++ N  SGA PPSI +L  LM L + +N  SG IP  +             N+ +GT+PS       L   ++S N ++G+IP +
Sbjct:   93 LSRLDQLRVLSLENNSLFGPIP-DLSHLVNLKSLFLSRNQFSGAFPPSILSLHRLMILSISHNNFSGSIPSEINALDRLTSLNLDFNRFNGTLPSLNQSF--LTSFNVSGNNLTGVIPVT 209          
BLAST of FC920544 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 61/220 (27.73%), Postives = 94/220 (42.73%), Query Frame = 2
Query:    2 WT---GNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMIYRLADLDLSMNQISGMIPASLGKMAVLATLNLDFNKYRVP 652
            WT   G+ C  NW GV+C     RV  I L G            +G + GY+   + KLT L+ L L+    + G++P      P L+ L+L  N+ +G     + ++  L  LN+  N   G I    + L SL  LD   N  +  +P +              NQ SGT+     +   L  L+++ N  +G IP+SL  + ++   N  FN    P
Sbjct:   51 WTAAAGDPCGQNWRGVTCSGS--RVTQIKLSG---------LELSGTLGGYM---LDKLTSLTELDLSS-NNLGGDLP--YQFPPNLQRLNLANNQFTGAASYSLSQITPLKYLNLGHNQFKGQIAIDFSKLDSLTTLDFSFNSFTNSLPATFSSLTSLKSLYLQNNQFSGTVDVLAGL--PLETLNIANNDFTGWIPSSLKGITLIKDGN-SFNTGPAP 250          
BLAST of FC920544 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 56/183 (30.60%), Postives = 82/183 (44.81%), Query Frame = 2
Query:    8 GNDCCHNWYGVSC---DQETHRVADINLRGESEDPIFQRAHRTGY-----MTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGXXXXXXXXXXXXNQISGTIPSSISMI 532
            G+ C   W G+ C   D  +  V   NL+GE  D + +     G        G   P+   +T       A+    TG IP  + ++ FL  + L  N LSG++P     L  L  L+I+ NNISG +PPS+ NL +L  L ++NN++SG +   V             N  SG IP  +  I
Sbjct:   59 GDPCGEAWQGIICNVSDIISITVNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQHFFLSANQ--FTGSIPESLGTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQNNQLSGTL--DVLQGLPLQDLNIENNLFSGPIPDKLLSI 237          
The following BLAST results are available for this feature:
BLAST of FC920544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
Y5830_ARATH5.752e-1228.90Probable inactive receptor kinase At5g58300 OS=Ara... [more]
Y1848_ARATH5.752e-1231.74Probable inactive receptor kinase At1g48480 OS=Ara... [more]
Y5659_ARATH9.811e-1229.31Probable inactive receptor kinase At5g16590 OS=Ara... [more]
SRF1_ARATH9.811e-1232.00Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
Y1719_ARATH1.281e-1134.78Probable inactive receptor kinase At1g27190 OS=Ara... [more]
Y1699_ARATH3.728e-1132.00Probable LRR receptor-like serine/threonine-protei... [more]
Y1143_ARATH3.728e-1132.26Probable LRR receptor-like serine/threonine-protei... [more]
Y5720_ARATH4.869e-1135.00Probable inactive receptor kinase At5g67200 OS=Ara... [more]
SRF6_ARATH6.359e-1127.73Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SRF3_ARATH6.359e-1130.60Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC32009G06EF RVDevelop1 Citrus clementina cDNA clone C32009G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920544 ID=FC920544; Name=FC920544; organism=Citrus clementina; type=EST; length=696bp
CTGGACGGGCAACGACTGTTGCCACAACTGGTACGGTGTTAGCTGTGACC
AGGAAACTCACCGGGTCGCTGACATTAACCTACGTGGCGAGTCTGAGGAC
CCGATATTCCAGCGGGCCCACCGAACCGGGTACATGACCGGGTATATCTC
ACCCGCTGTGTGTAAACTCACGCGTCTCTCCAGTTTAACGCTCGCCGACT
GGAAAGGCATCACCGGGGAAATCCCACGTTGCATTTCTTCAATTCCTTTT
CTCCGCATTCTTGATTTAATCGGAAATAAGTTATCGGGCGACATTCCCCG
AGATATTGGCCGGCTTCACAGACTCGCTGTCTTAAATATCGCCGATAACA
ACATATCGGGTGCGATTCCCCCTTCCATTGCTAATCTTTCCAGCTTGATG
CATCTTGACTTGCGTAACAACAGAATTTCGGGCCCGATTCCGGGAAGTGT
CGGGCGACTCCGAATGATGAGCCGGGCTTTGCTGTCTCGGAATCAGATTT
CGGGAACAATCCCAAGTTCCATTTCGATGATTTATCGTCTTGCCGATTTG
GACTTGTCGATGAACCAAATATCGGGTATGATACCGGCTTCGCTGGGGAA
AATGGCGGTATTGGCAACTCTTAATCTTGATTTTAACAAGTATCGGGTCC
CATACCGGCGAGTTTATGAACTCTGGGATCAGCAATTTAATCTCAG
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