FC920548

Overview
NameFC920548
Unique NameFC920548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14158 contig Ccv1_Contig14158:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.065e-56
Identity = 105/186 (56.45%), Postives = 137/186 (73.66%), Query Frame = 1
Query:   70 STMSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK 627
            S  +  S  GYDRHITIFSPEGRL+QVEYAFKA     + S+ VRGKD   V++QKKVPDKLLD T+V+++F I++ +G++  G   DAR    +A+ EAAEFR+KYGY+MP DVLAK +A+ SQ+YTQ AYMRPLGV+   +S+DEE GP ++K DPAG++ G+KAT+ G K+QE    LE   K
Sbjct:    2 SGAAAASAAGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFK 187          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.391e-56
Identity = 110/212 (51.89%), Postives = 151/212 (71.23%), Query Frame = 1
Query:   76 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQKLCRLQF--HPASVLQKILG 705
            MSR    GYD  I IFSP+G+L+Q+EYAFKA+K  G+TS+G+RGKD V V TQKK+PDKL+D  SVT L+ +T Y+G + TG+  D+++   +A  E A F  K+GY++P +VLAK +AD +Q+ TQHA  RPLGV  +++ ID+E GP+LFK DPAG F G+KAT+AG KEQE+ NFLEKK K++P  +  +  ++       S LQ +LG
Sbjct:    1 MSRSGTAGYDMSI-IFSPQGKLYQIEYAFKAIKTGGLTSVGIRGKDCVVVATQKKIPDKLIDPKSVTSLYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNVLAKRMADIAQLSTQHASARPLGVAMILIGIDDELGPQLFKVDPAGVFTGYKATAAGEKEQESTNFLEKKFKSNPQLSKDETIQVSLIVMAISTLQSVLG 211          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 9.013e-56
Identity = 108/184 (58.70%), Postives = 136/184 (73.91%), Query Frame = 1
Query:   76 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK 627
            MSRGS  G+DRHITIFSPEGRL+QVEYAFKA+    +T++ ++  D   V TQKKV +K +   +VTHLF ITK +G   TG  AD+R+ VQ+ARYEAA FR+KYGYEMPVDVL + IAD +QVYTQ+A MRPLG   ++++ D E GP ++K DPAG+F G KA S G K  EA ++LEKK K
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYK 184          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.105e-48
Identity = 95/210 (45.24%), Postives = 141/210 (67.14%), Query Frame = 1
Query:   76 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQKLCRLQFHPASVLQKILG 705
            MSRGS  G+DRHITIFSPEGR++QVEYAFKA+ +  +T++ V+G D+  +  QK+VPD L+   +VT ++ I++ +G  A GM  DA+  +++A+ EAA +++K GY+MP ++LAK +AD +Q YTQ+A MR LG   + +S D+E GP +++ DPAG++ G K  S G+K+  A +FLEKK+K     T  +   L       LQ  LG
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAI---EALQTSLG 207          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.888e-37
Identity = 92/212 (43.40%), Postives = 129/212 (60.85%), Query Frame = 1
Query:   88 SGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSID--EECG---PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQKLCRLQFHPASVLQKILGE 708
            S  G+D++IT+FSPEG L+QVEYAFKAV  AG+ ++ +R KD+V V TQ  VPDKL+   ++T L+ +    G+  TG   D + LVQ+AR EA+E++++YG  M V VLAK   D +QV TQ A MR +G +   + ++  +E G   P+++  DPAG    H A + G K+ EA  FLEKK KN P  T  +         + LQ  LGE
Sbjct:    2 SRAGFDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETITSLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAGGAAVH-ACAVGKKQIEACAFLEKKQKNAPFHTLSQK-EAAMIALAALQSALGE 211          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.221e-37
Identity = 79/178 (44.38%), Postives = 116/178 (65.17%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YDR IT+FSP+GRLFQVEYA +AVK  G T++G++ ++ V +   K+V  KL++  S+  ++ I  ++G    G+ ADAR LV++AR EA  +R+ YG  + VDVL K I D  QVYTQH  +RP G   ++  +D + G RLF+ DP+G    HKAT+ G   QEA++  E++ + D
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKR-GTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTK-GCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYRED 185          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.333e-34
Identity = 77/179 (43.02%), Postives = 108/179 (60.34%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GYDR ITIFSPEGRL+QVEYA +AV+  G T++G++ KD V +   +++  KL+D +S+  +F I  ++    +G+ ADAR L+ +AR EA   R  YG  + V+ LAK I D  Q YTQH   RP G+  ++  ID     RLF+ DP+G    +KAT+ G     A+  LE K   D
Sbjct:    9 GYDRAITIFSPEGRLYQVEYAREAVRR-GTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRH-SARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSED 185          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.685e-34
Identity = 76/179 (42.46%), Postives = 112/179 (62.57%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GYDR IT+FSP+GRLFQVEYA +AVK  G TS+GV+ K+ + +V  K+   KL++  S+  +F I +++G   +G+ ADAR ++++AR EA   R  Y   + V+ LAK I D  Q+YTQH  +RP G   ++  ++   G RLF+ DP+G    +KAT+ G     A+   EKK  +D
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVKR-GTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFGTALIIGGVNGR-GCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDD 184          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.425e-34
Identity = 75/178 (42.13%), Postives = 111/178 (62.36%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YDR IT+FSPEGRL+QVEYA +AV+  G T+IG+  KD V +   +++  KL+   S+  +F I  ++    +G+ ADAR L+ +AR EA  +R  YG E+ +++LAK I D  Q YTQH  +RP GV  ++  ID+    RLF+ DP+G    +KAT+ G      +  LEK+ ++D
Sbjct:    9 YDRAITVFSPEGRLYQVEYAREAVRR-GTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKN-EARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDD 184          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.697e-34
Identity = 74/179 (41.34%), Postives = 114/179 (63.69%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GYDR IT+FSP+GRLFQV+YA +AVK  G T++GV+ KD V +  +K+V  KL++  S   +F I  ++   ++G+ ADAR LV +AR EA  +R  YG  +P+ VL K I D  Q++TQ+  +RP G   ++  ++E+  P LF+ DP+G +F  KA + G     A+   E+K +++
Sbjct:    9 GYDRAITVFSPDGRLFQVQYAREAVKR-GATAVGVKCKDGVVLAVEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVNEK--PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDE 184          
The following BLAST results are available for this feature:
BLAST of FC920548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSA6_YEAST1.065e-5656.45Proteasome component C7-alpha OS=Saccharomyces cer... [more]
PSA6_DICDI1.391e-5651.89Proteasome subunit alpha type-6 OS=Dictyostelium d... [more]
PSA6_DROME9.013e-5658.70Proteasome subunit alpha type-6 OS=Drosophila mela... [more]
PSA6_CAEEL3.105e-4845.24Proteasome subunit alpha type-6 OS=Caenorhabditis ... [more]
PSA1_TRYBB1.888e-3743.40Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSMA_METKA3.221e-3744.38Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_METM53.333e-3443.02Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METTH5.685e-3442.46Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_METJA7.425e-3442.13Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSMA_THESM9.697e-3441.34Proteasome subunit alpha OS=Thermococcus sibiricus... [more]

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Properties
Property NameValue
Genbank descriptionC32009G10EF RVDevelop1 Citrus clementina cDNA clone C32009G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920548 ID=FC920548; Name=FC920548; organism=Citrus clementina; type=EST; length=722bp
CCGGGGGATCCGACGAGTAGAACTGCCTGAAGAAGAAAATTGAAAGAGAG
GAATCACAGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGGAGGAT
ACGATCGCCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTCAAGTC
GAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATCGGTGT
TCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGACA
AGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAAAGTAC
CTTGGATTGCTGGCAACTGGAATGACAGCTGATGCAAGGACATTGGTTCA
GCAGGCAAGATATGAAGCCGCTGAGTTTCGCTTCAAATATGGATATGAAA
TGCCTGTGGATGTGTTAGCCAAATGGATTGCAGACAAATCACAAGTATAT
ACTCAACATGCTTATATGAGACCACTTGGTGTAGTTGCTATGGTTTTGAG
TATTGACGAAGAATGTGGACCTCGCCTCTTTAAGTGTGACCCTGCTGGCC
ATTTCTTTGGCCACAAGGCAACAAGTGCTGGATTGAAGGAGCAAGAGGCA
ATTAATTTCTTGGAGAAGAAGATGAAGAATGATCCTGCGTTTACCTTTCA
GAAACTGTGCAGACTGCAATTTCACCCTGCATCAGTCCTGCAGAAGATTT
TAGGCGAGTGAGATTGAGTTGG
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