FC920548
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19 Identity = 55/186 (29.57%), Postives = 97/186 (52.15%), Query Frame = 1 Query: 100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQKL 657 YD +T++SP+GRL QVEYA +A+K T +G++ + +V K+ + L H ++ I + G+ G+ +D R L + + E + +R+ Y +P+ LA+ + K Q TQ+ RP GV ++ D++ G + + DP+ TS G + Q A +LE+ + N T ++L Sbjct: 6 YDGDVTVWSPQGRLHQVEYAVEAMKQGSAT-VGIKSETHAVIVALKRAQNDLSSHQK--KVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYDKD-GAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQL 187
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.746e-19 Identity = 59/186 (31.72%), Postives = 95/186 (51.08%), Query Frame = 1 Query: 100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQKL 657 YD T +SP+GRL QVEYA +A+K T +G+ K +V K+ ++L + L I ++G+ G+ DAR L + EA + + +PV L +A+K+Q+ TQ RP GV +V+ DE GP L + P+G + TS G + Q A ++E+ + P + ++L Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQGSAT-VGLVSKTHAVLVALKRNAEELSSYQK--KLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDES-GPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREEL 187
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA5_ENCCU (Probable proteasome subunit alpha type-5 OS=Encephalitozoon cuniculi GN=PUP2 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17 Identity = 53/179 (29.61%), Postives = 95/179 (53.07%), Query Frame = 1 Query: 100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQH-----AYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKK 621 + + + +S EGR+ Q+EYA KA+ G T+IGVR K+ V + ++KK+ L + SV + I ++ L +G++ D +T+V+++R YG + V+ L K+++ S + + + RP GV ++ D E PRL+ DP+G + +KA + G + LE + Sbjct: 4 FKQSVNTYSSEGRIHQIEYAMKAMNL-GTTTIGVRTKEFVILCSEKKILSTLQNPKSVVKHYKIYDHIVLGFSGISGDTKTIVKRSRDFCISHTHMYGENISVERLLKYLSSLSLRFGEEDEAKMIFRRPFGVSLIIAGFDTE--PRLYSLDPSGSYISYKAKAIGSGHEVVEGILENE 179
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15 Identity = 53/175 (30.29%), Postives = 85/175 (48.57%), Query Frame = 1 Query: 100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 624 YD FSP GRLFQVEYA +A+K VT +G+R +V K+ D+L + + +++GL G+ DAR L R + + ++ V+ + DK+Q TQ RP GV +++ D+ G L + P+G+ T+ G + Q A +LE+ + Sbjct: 6 YDGDTVTFSPTGRLFQVEYALEAIKQGSVT-VGLRSNTHAVLVALKRNADELSSYQK--KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTL 176
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA4_ENCCU (Probable proteasome subunit alpha type-4 OS=Encephalitozoon cuniculi GN=PRE9 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11 Identity = 54/171 (31.58%), Postives = 85/171 (49.71%), Query Frame = 1 Query: 121 FSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633 F+ EGRL QVE+A K V AG T IG D V ++ K P + + ++ ++ + + G+ DA L + AR +A E ++G E P+ L K++ + Q +TQ+A RP GV + + + L DP+G K G + +EAIN + +KND Sbjct: 11 FTDEGRLPQVEFAIKNVSRAG-TIIGYVCSDGVVLMGVNKEPT----NGPMEKIYQLSDSIYCVLCGLFGDAMELKRYARIKAQEVLERFGVECPLTTLCKFVGQRKQAFTQYAGTRPFGVSFLYAGVIDG-KYALMSTDPSGTSNRWKGMCYG-ENEEAIN---RGLKND 171 The following BLAST results are available for this feature:
BLAST of FC920548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 175
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920548 ID=FC920548; Name=FC920548; organism=Citrus clementina; type=EST; length=722bpback to top |