FC920548

Overview
NameFC920548
Unique NameFC920548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 55/186 (29.57%), Postives = 97/186 (52.15%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQKL 657
            YD  +T++SP+GRL QVEYA +A+K    T +G++ +    +V  K+  + L  H     ++ I  + G+   G+ +D R L +  + E + +R+ Y   +P+  LA+ +  K Q  TQ+   RP GV  ++   D++ G  + + DP+        TS G + Q A  +LE+ + N    T ++L
Sbjct:    6 YDGDVTVWSPQGRLHQVEYAVEAMKQGSAT-VGIKSETHAVIVALKRAQNDLSSHQK--KVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYDKD-GAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQL 187          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.746e-19
Identity = 59/186 (31.72%), Postives = 95/186 (51.08%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQKL 657
            YD   T +SP+GRL QVEYA +A+K    T +G+  K    +V  K+  ++L  +     L  I  ++G+   G+  DAR L    + EA   +  +   +PV  L   +A+K+Q+ TQ    RP GV  +V+  DE  GP L +  P+G    +  TS G + Q A  ++E+ +   P  + ++L
Sbjct:    6 YDGDATTWSPQGRLHQVEYALEAIKQGSAT-VGLVSKTHAVLVALKRNAEELSSYQK--KLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDES-GPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREEL 187          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA5_ENCCU (Probable proteasome subunit alpha type-5 OS=Encephalitozoon cuniculi GN=PUP2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 53/179 (29.61%), Postives = 95/179 (53.07%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQH-----AYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKK 621
            + + +  +S EGR+ Q+EYA KA+   G T+IGVR K+ V + ++KK+   L +  SV   + I  ++ L  +G++ D +T+V+++R         YG  + V+ L K+++  S  + +       + RP GV  ++   D E  PRL+  DP+G +  +KA + G   +     LE +
Sbjct:    4 FKQSVNTYSSEGRIHQIEYAMKAMNL-GTTTIGVRTKEFVILCSEKKILSTLQNPKSVVKHYKIYDHIVLGFSGISGDTKTIVKRSRDFCISHTHMYGENISVERLLKYLSSLSLRFGEEDEAKMIFRRPFGVSLIIAGFDTE--PRLYSLDPSGSYISYKAKAIGSGHEVVEGILENE 179          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15
Identity = 53/175 (30.29%), Postives = 85/175 (48.57%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 624
            YD     FSP GRLFQVEYA +A+K   VT +G+R      +V  K+  D+L  +     +    +++GL   G+  DAR L    R +       +  ++ V+     + DK+Q  TQ    RP GV  +++  D+  G  L +  P+G+      T+ G + Q A  +LE+ +
Sbjct:    6 YDGDTVTFSPTGRLFQVEYALEAIKQGSVT-VGLRSNTHAVLVALKRNADELSSYQK--KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTL 176          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA4_ENCCU (Probable proteasome subunit alpha type-4 OS=Encephalitozoon cuniculi GN=PRE9 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 54/171 (31.58%), Postives = 85/171 (49.71%), Query Frame = 1
Query:  121 FSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            F+ EGRL QVE+A K V  AG T IG    D V ++   K P     +  +  ++ ++  +  +  G+  DA  L + AR +A E   ++G E P+  L K++  + Q +TQ+A  RP GV  +   + +     L   DP+G     K    G + +EAIN   + +KND
Sbjct:   11 FTDEGRLPQVEFAIKNVSRAG-TIIGYVCSDGVVLMGVNKEPT----NGPMEKIYQLSDSIYCVLCGLFGDAMELKRYARIKAQEVLERFGVECPLTTLCKFVGQRKQAFTQYAGTRPFGVSFLYAGVIDG-KYALMSTDPSGTSNRWKGMCYG-ENEEAIN---RGLKND 171          
The following BLAST results are available for this feature:
BLAST of FC920548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSA1_CAEEL2.319e-1929.57Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]
PSA1_SCHPO6.746e-1931.72Probable proteasome subunit alpha type-1 OS=Schizo... [more]
PSA5_ENCCU3.702e-1729.61Probable proteasome subunit alpha type-5 OS=Enceph... [more]
PSA1_YEAST2.031e-1530.29Proteasome component PRE5 OS=Saccharomyces cerevis... [more]
PSA4_ENCCU1.780e-1131.58Probable proteasome subunit alpha type-4 OS=Enceph... [more]

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Properties
Property NameValue
Genbank descriptionC32009G10EF RVDevelop1 Citrus clementina cDNA clone C32009G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920548 ID=FC920548; Name=FC920548; organism=Citrus clementina; type=EST; length=722bp
CCGGGGGATCCGACGAGTAGAACTGCCTGAAGAAGAAAATTGAAAGAGAG
GAATCACAGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGGAGGAT
ACGATCGCCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTCAAGTC
GAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATCGGTGT
TCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGACA
AGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAAAGTAC
CTTGGATTGCTGGCAACTGGAATGACAGCTGATGCAAGGACATTGGTTCA
GCAGGCAAGATATGAAGCCGCTGAGTTTCGCTTCAAATATGGATATGAAA
TGCCTGTGGATGTGTTAGCCAAATGGATTGCAGACAAATCACAAGTATAT
ACTCAACATGCTTATATGAGACCACTTGGTGTAGTTGCTATGGTTTTGAG
TATTGACGAAGAATGTGGACCTCGCCTCTTTAAGTGTGACCCTGCTGGCC
ATTTCTTTGGCCACAAGGCAACAAGTGCTGGATTGAAGGAGCAAGAGGCA
ATTAATTTCTTGGAGAAGAAGATGAAGAATGATCCTGCGTTTACCTTTCA
GAAACTGTGCAGACTGCAATTTCACCCTGCATCAGTCCTGCAGAAGATTT
TAGGCGAGTGAGATTGAGTTGG
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