FC920548

Overview
NameFC920548
Unique NameFC920548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14158 contig Ccv1_Contig14158:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.321e-32
Identity = 74/178 (41.57%), Postives = 111/178 (62.36%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YDR IT+FSP+GRLFQVEYA +AVK  G T++G++ KD V ++++KKV  +L++ TS+  +  I   +  + +G+ ADAR L+  AR    + +  YG  M ++ L K +AD+ Q YTQ+  +RP GV  +   +D   GPRLF CDPAG    +K  S G  + +   +LEK+ K +
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKK-GSTALGIKFKDGVALISEKKVRSRLVEKTSLEKIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQYTQYGGVRPYGVSIIFAGLD-SIGPRLFDCDPAGTINEYKCVSIGAGKDQVTAYLEKEYKEN 183          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.076e-32
Identity = 70/179 (39.11%), Postives = 110/179 (61.45%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GYDR IT+FSP+GRLFQV YA +AVK  G T++GV+  + V +  +K++  +L++  S   +F I  ++   ++G+ ADAR LV +AR EA  +R  YG   PV V+ K I D  Q++TQ+  +RP G   ++  I++   P L++ DP+G +F  KA + G     A+   E+K ++D
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKR-GATAVGVKCGEGVVLAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAGINDR--PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDD 184          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.076e-32
Identity = 70/179 (39.11%), Postives = 110/179 (61.45%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GYDR IT+FSP+GRLFQV YA +AVK  G T++GV+ KD V +  +K++  +L++  S   +F I  ++   ++G+ ADAR LV +AR EA   R  YG   P+ V+ K I D  Q++TQ+  +RP G   ++  ++++  P L++ DP+G +F  KA + G     A+   E K ++D
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKR-GATAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNDK--PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDD 184          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.185e-31
Identity = 70/179 (39.11%), Postives = 110/179 (61.45%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GYDR IT+FSP+GRLFQV YA +AVK  G T++GV+  + V +  +K++  +L++  S   +F I  ++   ++G+ ADAR LV +AR EA   R  YG   P+ V+ K I D  Q++TQ+  +RP G   ++  ++E+  P L++ DP+G +F  KA + G     A+   E+K K+D
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKR-GATAVGVKCNEGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNEK--PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDD 184          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.022e-31
Identity = 70/179 (39.11%), Postives = 109/179 (60.89%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GYDR IT+FSP+GRLFQV YA +AVK  G T++GV+ K  V +  +K++  +L++ +S   +F I  ++    +G+ ADAR LV +AR EA  +R  YG  +P+ VL K I D  Q +TQ+  +RP G   ++  ++E+  P L++ DP+G +F  KA + G     A+   E+   +D
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKR-GATAVGVKWKGGVVLAVEKRITSRLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK--PELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDD 184          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.641e-31
Identity = 69/179 (38.55%), Postives = 109/179 (60.89%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GYDR IT+FSP+GRLFQV YA +AVK  G T++GV+ K+ V +  +K++  KL++ +S   +F I  ++    +G+ ADAR LV +AR EA  +R  YG  +P+ VL K I D  Q +TQ+  +RP G   ++  ++++  P L++ DP+G +F  +A + G     A+   E    +D
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKR-GATAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNDK--PELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDD 184          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 70/181 (38.67%), Postives = 109/181 (60.22%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPA 639
            GYDR IT+FSP+GRL+QVEYA +AVK  G T++G++  D V ++  K+V  KLL+ +S+  +F I +++G+ ++G+  DAR LV +AR E    R  Y   + V+ LAK + D  Q  TQ+  +RP G   ++  + +    RLF+ DP+G    +KAT  G+    A+   E++   D A
Sbjct:    8 GYDRAITVFSPDGRLYQVEYAREAVKR-GTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQYGGIRPYGTALLIAGVSDG-ESRLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYTADLA 186          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.003e-30
Identity = 71/179 (39.66%), Postives = 109/179 (60.89%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GYDR ITIFSP+G L+QV+YAF+AVK  G T++GV+ K++V ++ +KK   +LLD  S+  +F +  ++G    G+ +D R L+  AR  + + R  Y   + +D L K I+D  Q+YTQH  +RP GV  +V  +D     +LF  +P+G F  ++A + G     A ++LEK  K D
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVKK-GWTTLGVKTKNAVVILGEKKKASQLLDVDSIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVDRGV-TKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYKED 185          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 72/180 (40.00%), Postives = 111/180 (61.67%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSI-DEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GYDR IT+FSP+GRLFQVEYA +AVK  G TSIG++  + + +   K+    L++ TS+  +F I +++G   +G+ ADAR LV++AR EA   +  Y   + VD L+K + D  Q+YTQ+  +RP G   ++  + D  C  +LF+ DP+G    +KAT+ G     A++  E + K+D
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVKR-GTTSIGIKCSEGIVLAVDKRTTSNLVEATSIEKIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMYTQNGGVRPFGSALIIGGVYDGIC--KLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDD 184          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.712e-30
Identity = 70/179 (39.11%), Postives = 105/179 (58.66%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GYDR ITIFSP+G L+QV+YAF+AVK  G T++GV+ K  V ++ +K+   +LLD   +  +F +  ++G    G+ +D R L+  AR +A + R  Y   + ++ L K I+D  Q YTQH  +RP GV  +V  ID+   P+L   +P+G F  + A + G     A  +LEK  K D
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVKR-GWTTLGVKTKSGVVLLAEKRKATQLLDVDGIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDKGKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKED 186          
The following BLAST results are available for this feature:
BLAST of FC920548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSMA_PICTO5.321e-3241.57Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSMA_PYRFU9.076e-3239.11Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSMA_PYRAB9.076e-3239.11Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_PYRHO1.185e-3139.11Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSMA_THEGJ2.022e-3139.11Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSMA_THEON2.641e-3138.55Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_METB63.449e-3138.67Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSMA_METS51.003e-3039.66Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSMA_METS31.311e-3040.00Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSMA_SULAC1.712e-3039.11Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]

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Properties
Property NameValue
Genbank descriptionC32009G10EF RVDevelop1 Citrus clementina cDNA clone C32009G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920548 ID=FC920548; Name=FC920548; organism=Citrus clementina; type=EST; length=722bp
CCGGGGGATCCGACGAGTAGAACTGCCTGAAGAAGAAAATTGAAAGAGAG
GAATCACAGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGGAGGAT
ACGATCGCCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTCAAGTC
GAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATCGGTGT
TCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGACA
AGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAAAGTAC
CTTGGATTGCTGGCAACTGGAATGACAGCTGATGCAAGGACATTGGTTCA
GCAGGCAAGATATGAAGCCGCTGAGTTTCGCTTCAAATATGGATATGAAA
TGCCTGTGGATGTGTTAGCCAAATGGATTGCAGACAAATCACAAGTATAT
ACTCAACATGCTTATATGAGACCACTTGGTGTAGTTGCTATGGTTTTGAG
TATTGACGAAGAATGTGGACCTCGCCTCTTTAAGTGTGACCCTGCTGGCC
ATTTCTTTGGCCACAAGGCAACAAGTGCTGGATTGAAGGAGCAAGAGGCA
ATTAATTTCTTGGAGAAGAAGATGAAGAATGATCCTGCGTTTACCTTTCA
GAAACTGTGCAGACTGCAATTTCACCCTGCATCAGTCCTGCAGAAGATTT
TAGGCGAGTGAGATTGAGTTGG
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