FC920548

Overview
NameFC920548
Unique NameFC920548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14158 contig Ccv1_Contig14158:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.712e-30
Identity = 69/183 (37.70%), Postives = 108/183 (59.02%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFT 645
            GYDR IT+FSP+GRL+QVEYA +AVK  G T++G++  + V ++  K+V  +LL+  S+  +F I  ++G+ ++G+  DAR+LV +AR E+   R  Y   + V++LAK + D  Q YTQ    RP G   ++  + +    RLF+ DP+G    +KAT  G      I   E + + D  F+
Sbjct:    8 GYDRAITVFSPDGRLYQVEYAREAVKR-GTTAVGIKCSEGVVLIVDKRVTSRLLEPVSIEKIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTYTQFGGARPYGTALLIAGVSDG-EARLFETDPSGTLLEYKATGIGTGRPAVIKTFEDEYQEDADFS 188          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 67/175 (38.29%), Postives = 108/175 (61.71%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKK 621
            GYDR IT+FSP+GRL+QVEYA +AVK  G T++G++  D + ++  K+V  KLL+ +S+  +F I  ++G+ ++G+  DAR+LV +AR E+   R  Y  ++ V++L+K + D  Q YTQ    RP G   ++  I +    RLF+ DP+G    +KAT  G+     +   E++
Sbjct:    8 GYDRAITVFSPDGRLYQVEYAREAVKR-GTTAVGIKCNDGIVLLVDKRVNSKLLEPSSIEKIFKIDNHIGVASSGLVGDARSLVDRARVESQVNRVSYDEQIDVEMLSKKLCDHMQTYTQFGGARPYGTALLIAGISDG-QFRLFETDPSGTLLEYKATGIGIGRNAVMKVFEEE 180          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 67/178 (37.64%), Postives = 101/178 (56.74%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YDR  TIFSPEG L+QV YAF+AVK  G TS+G++  + V +  +K+    L+D   +  ++ I  ++G+   GM  D R L+  AR      R  YG   PV+++AK +AD  Q YTQH  +RP GV  +   ++ +   ++++ DP G +F  KA + G  EQ A    EK  ++D
Sbjct:   12 YDRAATIFSPEGDLYQVRYAFEAVKK-GWTSLGIKTNEGVVIAAEKRFIGPLVDIDDIDKIYKIDDHIGVAFAGMGGDGRILIDYARVFTVRHRLLYGEPPPVELVAKVVADVKQAYTQHGGVRPFGVALIFAGVNPDGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYRSD 188          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.495e-30
Identity = 68/179 (37.99%), Postives = 105/179 (58.66%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GYDR ITIFSP+G L+QV+YAF+AVK  G T++GV+ K  V ++ +K+   +LLD  S+  +F +  ++G    G+ +D R L+  AR +A + R  Y   + +D L K ++D  Q+YTQH  +RP GV  ++  ID    P+L   +P+G F  + A + G     A  + EK  + D
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVKK-GWTTLGVKTKAGVVLIGEKRKATQLLDVDSIEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGIDRGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYRED 186          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.109e-29
Identity = 71/179 (39.66%), Postives = 105/179 (58.66%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YD   TIFSPEGRL+QVEYA +A+  AG ++IG+  KD V ++ +KKV  KLL   TS   ++ I  ++     G+ +DA  L+  AR +A  + F Y   MPV+ L + + D  Q YTQ   +RP GV  +    D+  G +L+  DP+G++ G KAT+ G   Q A + L++  K+D
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKDD 182          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.472e-29
Identity = 68/178 (38.20%), Postives = 107/178 (60.11%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTH-LFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKN 630
            YD   TIFSPEGRL+QVEYA +A+  AG T +G+   + + V  ++K   KLLD + +T  ++ ++  +     G+TADA  L+   R+ AA +R  YG EMPV+ L + + ++ Q YTQ    RP GV  + +  D+  G +L++ DP+G++ G KAT  G   Q A+  L+++ K+
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAISHAG-TCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKS 181          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA4_PETHY (Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.216e-29
Identity = 71/179 (39.66%), Postives = 104/179 (58.10%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YD   TIFSPEGRL+QVEYA +A+  AG ++IG+  KD V +V +KKV  KLL   TS   ++ I  ++     G+ +DA  L+  AR +A  + F Y   MPV+ L + + D  Q YTQ+  + P GV  +    D+  G +LF  DP+G++ G KA + G   Q A + L++  K+D
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQYGGLPPFGVSFLFAGWDKNFGFQLFMSDPSGNYAGWKAAAIGANNQAAQSMLKQDYKDD 182          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.506e-29
Identity = 70/179 (39.11%), Postives = 104/179 (58.10%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YD   TIFSPEGRL+QVEYA +A+  AG ++IG+  KD V ++ +KKV  KLL   TS   ++ I  ++     G+ +DA  L+  AR +A  + F Y   MPV+ L + + D  Q YTQ   +RP GV  +    D+  G +L+  DP+G++ G KA + G   Q A + L++  K+D
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKDD 182          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.392e-29
Identity = 70/177 (39.55%), Postives = 99/177 (55.93%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK 627
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  SV  +  +  ++ L   G+ ADAR LV +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D   G P L++ DP+G F   KA + G        FLEK  K
Sbjct:    4 YDRAITVFSPDGHLFQVEYAMEAVRK-GNAAVGVRGTDTVVLGVEKKSTPKLQDSRSVRKIVNLDDHIALACAGLKADARVLVNKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPHTGVPSLYQTDPSGTFSAWKANATGRNSNSTREFLEKNYK 179          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA4_YEAST (Proteasome component Y13 OS=Saccharomyces cerevisiae GN=PRE9 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.392e-29
Identity = 66/179 (36.87%), Postives = 102/179 (56.98%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDH-TSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YD   TIFSPEGRL+QVEYA +++  AG T+IG+   D + +  ++KV   LL+  TS   L+ +   + +   G+TADA  L+  AR  A  +   Y  ++PV++L + ++D  Q YTQH  +RP GV  +    D+  G +L+  +P+G++ G KA S G     A   L+   K+D
Sbjct:    6 YDSRTTIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDD 183          
The following BLAST results are available for this feature:
BLAST of FC920548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSMA_METMJ1.712e-3037.70Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSMA_METPE4.980e-3038.29Proteasome subunit alpha OS=Methanosphaerula palus... [more]
PSMA_AERPE4.980e-3037.64Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSMA_SULTO8.495e-3037.99Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSA4_SPIOL1.109e-2939.66Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSA4_CAEEL2.472e-2938.20Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSA4_PETHY4.216e-2939.66Proteasome subunit alpha type-4 OS=Petunia hybrida... [more]
PSA4_ARATH5.506e-2939.11Proteasome subunit alpha type-4 OS=Arabidopsis tha... [more]
PSA7_SOLLC9.392e-2939.55Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]
PSA4_YEAST9.392e-2936.87Proteasome component Y13 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionC32009G10EF RVDevelop1 Citrus clementina cDNA clone C32009G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920548 ID=FC920548; Name=FC920548; organism=Citrus clementina; type=EST; length=722bp
CCGGGGGATCCGACGAGTAGAACTGCCTGAAGAAGAAAATTGAAAGAGAG
GAATCACAGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGGAGGAT
ACGATCGCCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTCAAGTC
GAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATCGGTGT
TCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGACA
AGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAAAGTAC
CTTGGATTGCTGGCAACTGGAATGACAGCTGATGCAAGGACATTGGTTCA
GCAGGCAAGATATGAAGCCGCTGAGTTTCGCTTCAAATATGGATATGAAA
TGCCTGTGGATGTGTTAGCCAAATGGATTGCAGACAAATCACAAGTATAT
ACTCAACATGCTTATATGAGACCACTTGGTGTAGTTGCTATGGTTTTGAG
TATTGACGAAGAATGTGGACCTCGCCTCTTTAAGTGTGACCCTGCTGGCC
ATTTCTTTGGCCACAAGGCAACAAGTGCTGGATTGAAGGAGCAAGAGGCA
ATTAATTTCTTGGAGAAGAAGATGAAGAATGATCCTGCGTTTACCTTTCA
GAAACTGTGCAGACTGCAATTTCACCCTGCATCAGTCCTGCAGAAGATTT
TAGGCGAGTGAGATTGAGTTGG
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