FC920548

Overview
NameFC920548
Unique NameFC920548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14158 contig Ccv1_Contig14158:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.227e-28
Identity = 70/178 (39.33%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YDR IT+FSP+G LFQVEYA +AVK  G T++GVRGKD V +  +KK   KL D  +V  +  +   + +   G+TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   +D
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKK-GSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDD 179          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.227e-28
Identity = 66/177 (37.29%), Postives = 101/177 (57.06%), Query Frame = 1
Query:   88 SGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 618
            S   YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRGKD + +  +KK   KL D  S+  +  +  ++ L   G+TAD+R L+ +A  E   +R        V+ ++K+IA   Q YTQ   +RP G+  +++  D +  P L++ DP+G +   KA + G   +    FLEK
Sbjct:    2 SSARYDRAITVFSPDGHLFQVEYAMEAVRK-GTVAVGVRGKDVIVLGVEKKATAKLQDARSIRKIVKLDDHICLTFAGLTADSRVLISKALMECQSYRLTVEDSPSVEYISKFIAGIQQRYTQSGGVRPFGISTLIVGFDTDGTPNLYQTDPSGSYSSWKAAAIGRSSKSVGEFLEK 177          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.227e-28
Identity = 73/181 (40.33%), Postives = 105/181 (58.01%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDH-TSVTH-LFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATS-AGLKEQEAINFLEKKMKND 633
            YD+  TIFSPEGR++QVEYA  A++ AG T +G+  KD + +  +KK   KLLD  TS++  +F I +++     G+T+DA  L+  AR  +  F ++Y   MPV+ L   I D  Q YTQ+  +RP GV  +    D   G +L++ DP+G+F G KATS  G   Q A + L    K D
Sbjct:    5 YDQRTTIFSPEGRVYQVEYAMTAIRHAGAT-VGILAKDGIVLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSDANILINYARLSSQRFFYQYQEPMPVEQLVSQICDTKQGYTQYGGLRPFGVSFLYAGWDRHYGFQLYQSDPSGNFAGWKATSIGGENSQVAQSVLRSNYKPD 184          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 2.092e-28
Identity = 71/179 (39.66%), Postives = 102/179 (56.98%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GY   +T FSP G+L Q+EYA  AV AAG  S+G++  + V + T+KK    L D  SV  + PITK++G++ +GM  D R LV++AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   DE+  P LF+ DP+G +F  KAT+ G        FLEK+   D
Sbjct:    5 GYSFSLTTFSPSGKLVQIEYALAAV-AAGAPSVGIKASNGVVLATEKKQKSILYDEQSVHKIEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDED-RPYLFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNED 181          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.733e-28
Identity = 70/179 (39.11%), Postives = 104/179 (58.10%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GYDR ITIFSPEG+++QVEYA +AVK  G  ++GV+ K  V +  +K+    L D +S+  ++ I +++    +G+ ADAR L+  AR  A   RF Y   + V+ L K + +  Q YTQ    RP GV  ++  +D   G RL++ DP+G + G+ AT+ G +      FLEK  K D
Sbjct:    8 GYDRAITIFSPEGKIYQVEYAGEAVKR-GWPTVGVKCKAGVVLTAEKRKISALFDSSSLEKIYLIDEHVAASPSGLLADARILIDYARDVALSHRFIYDEPIDVEFLTKAVCNLKQQYTQFGGARPFGVALLIAGVDRH-GARLYQTDPSGVYIGYFATAIGAESGTITEFLEKNYKFD 184          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.733e-28
Identity = 67/178 (37.64%), Postives = 105/178 (58.99%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YDR IT+FSP+G LFQVEYA +AVK  G T++G+RGKD V +  +KK   KL +  +V  +  + +++ +   G+TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   ++
Sbjct:    5 YDRAITVFSPDGHLFQVEYAQEAVKK-GSTAVGIRGKDIVVLGVEKKSVAKLQEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDE 181          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.569e-28
Identity = 69/178 (38.76%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YDR IT+FSP+G LFQVEYA +AVK  G T++GVRGKD V +  +KK   KL D  +V  +  +   + +   G+TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   ++
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKK-GSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDE 179          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.661e-28
Identity = 64/177 (36.16%), Postives = 106/177 (59.89%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKN 630
            YDR IT+FSP+G LFQVEYA +AV+  G+ ++GV+GKDS+    +KK   KL D  +   ++ + +++ L + G++ADAR +V  A+ E   FR  Y   + VD+L +++A   Q  TQ +  RP GV  ++   +E   P+L+K +P+G      A + G  ++  + F+EK  ++
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVRK-GLCAVGVKGKDSIIFAVEKKSVQKLQDSRTTRKIYKLDEHIYLASAGLSADARVVVNHAQLECQRFRLSYEDAIDVDLLVRYVARVQQRSTQSSGSRPYGVSTIIGGFNENGQPQLWKTEPSGTSSAWNAAAIGRNDKVVLEFMEKNYQD 178          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.661e-28
Identity = 69/177 (38.98%), Postives = 99/177 (55.93%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK 627
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  SV  +  +  ++ L   G+ ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D   G P L++ DP+G F   KA + G        FLEK  K
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDNVVLGVEKKSTAKLQDTRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNFK 179          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA7_PONAB (Proteasome subunit alpha type-7 OS=Pongo abelii GN=PSMA7 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.951e-28
Identity = 67/178 (37.64%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YDR IT+FSP+G LFQVEYA +A+K  G T++GVRG+D V +  +KK   KL D  +V  +  +   + +   G+TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   ++
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAIKK-GSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDSVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDE 179          
The following BLAST results are available for this feature:
BLAST of FC920548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSA7_MOUSE1.227e-2839.33Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSA7_DICDI1.227e-2837.29Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]
PSA4_DICDI1.227e-2840.33Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]
PSA2_CARAU2.092e-2839.66Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSMA_PYRAE2.733e-2839.11Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]
PSA7_CARAU2.733e-2837.64Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSA7_BOVIN3.569e-2838.76Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA7_TRYBB4.661e-2836.16Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]
PSA7_CICAR4.661e-2838.98Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSA7_PONAB7.951e-2837.64Proteasome subunit alpha type-7 OS=Pongo abelii GN... [more]

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Properties
Property NameValue
Genbank descriptionC32009G10EF RVDevelop1 Citrus clementina cDNA clone C32009G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920548 ID=FC920548; Name=FC920548; organism=Citrus clementina; type=EST; length=722bp
CCGGGGGATCCGACGAGTAGAACTGCCTGAAGAAGAAAATTGAAAGAGAG
GAATCACAGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGGAGGAT
ACGATCGCCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTCAAGTC
GAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATCGGTGT
TCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGACA
AGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAAAGTAC
CTTGGATTGCTGGCAACTGGAATGACAGCTGATGCAAGGACATTGGTTCA
GCAGGCAAGATATGAAGCCGCTGAGTTTCGCTTCAAATATGGATATGAAA
TGCCTGTGGATGTGTTAGCCAAATGGATTGCAGACAAATCACAAGTATAT
ACTCAACATGCTTATATGAGACCACTTGGTGTAGTTGCTATGGTTTTGAG
TATTGACGAAGAATGTGGACCTCGCCTCTTTAAGTGTGACCCTGCTGGCC
ATTTCTTTGGCCACAAGGCAACAAGTGCTGGATTGAAGGAGCAAGAGGCA
ATTAATTTCTTGGAGAAGAAGATGAAGAATGATCCTGCGTTTACCTTTCA
GAAACTGTGCAGACTGCAATTTCACCCTGCATCAGTCCTGCAGAAGATTT
TAGGCGAGTGAGATTGAGTTGG
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