FC920548

Overview
NameFC920548
Unique NameFC920548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14158 contig Ccv1_Contig14158:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.771e-27
Identity = 66/176 (37.50%), Postives = 106/176 (60.23%), Query Frame = 1
Query:   91 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 618
            G GYD   + FSP+GR+FQ++YA KAV+ +G T IG+RGKD+V +  +K +  KL +  +   +F I K +G+   G+ AD   +   AR EAA +R ++   +P+  L   +A     YT ++ +RP G+  ++ S DE  GP+L+K +P+G  FG+ A ++G  +Q A   +EK
Sbjct:    5 GTGYDLSASQFSPDGRVFQIDYASKAVEKSG-TVIGIRGKDAVVLAVEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEMEK 179          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.771e-27
Identity = 68/178 (38.20%), Postives = 112/178 (62.92%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            Y   +T FSP G+L Q+E+A +A  A+G ++IG++ K+ V ++T+KK+   L+D TSV  +  IT+ +GL+  GM  D+R L+++AR E+ ++  +Y  ++PV  L + +A   Q +TQ   +RP GV  +V   DE+ GP L++ DP+G +F  KAT+ G     +  FLEK+  +D
Sbjct:    5 YSFSLTTFSPSGKLVQIEHALQAA-ASGGSAIGIKAKNGVVLITEKKL-HSLVDVTSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEK-GPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDD 179          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA7B_ARATH (Proteasome subunit alpha type-7-B OS=Arabidopsis thaliana GN=PAD2 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.313e-27
Identity = 67/177 (37.85%), Postives = 97/177 (54.80%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK 627
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  S   +  +  ++ L   G+ ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D     P L++ DP+G F   KA + G        FLEK  K
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK 179          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.313e-27
Identity = 67/177 (37.85%), Postives = 97/177 (54.80%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK 627
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  S   +  +  ++ L   G+ ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D     P L++ DP+G F   KA + G        FLEK  K
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK 179          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.021e-27
Identity = 70/179 (39.11%), Postives = 100/179 (55.87%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GY   +T FSP G+L Q+EYA  AV AAG  S+G++  + V + T+KK    L D  S   + PITK++G++ +GM  D R LV++AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   DE   P LF+ DP+G +F  KAT+ G        FLEK+   D
Sbjct:    5 GYSFSLTTFSPSGKLVQIEYALAAV-AAGAPSVGIKATNGVVLATEKKQKSILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED 181          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 3.946e-27
Identity = 69/176 (39.20%), Postives = 101/176 (57.39%), Query Frame = 1
Query:   91 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 618
            G GYD   + FSP+GR+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G+ ADAR+L   AR EA+ FR  +GY +P+  LA  +A     YT ++ +RP G   M+ S     G +L+  DP+G  +G+   + G   Q A   +EK
Sbjct:    5 GTGYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK 179          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.154e-27
Identity = 69/178 (38.76%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YDR ITIFSP+GRL+QVEYA +AVK  G  SIGVR  + V +   K+    L++ TSV  +     ++G+ + G  ADAR L+  AR+++   R +YG  + ++ L K + D  Q YTQ    RP GV  ++  + E   PRL++ DP+G  +  KA S G    +    LE+  ++D
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKR-GTASIGVRTPEGVVLAADKRSRSPLMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGV-ENGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDD 185          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSJ (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. japonica GN=Os08g0548900 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.154e-27
Identity = 67/178 (37.64%), Postives = 99/178 (55.62%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEEC-GPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKN 630
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  S+  +  +  ++ L   G+ ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D     P L++ DP+G F   KA + G        FLEK  K+
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKD 180          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSI (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. indica GN=OsI_029135 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.154e-27
Identity = 67/178 (37.64%), Postives = 99/178 (55.62%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEEC-GPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKN 630
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  S+  +  +  ++ L   G+ ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D     P L++ DP+G F   KA + G        FLEK  K+
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKD 180          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 5.154e-27
Identity = 69/176 (39.20%), Postives = 101/176 (57.39%), Query Frame = 1
Query:   91 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 618
            G GYD   + FSP+GR+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G+ ADAR+L   AR EA+ FR  +GY +P+  LA  +A     YT ++ +RP G   M+ S     G +L+  DP+G  +G+   + G   Q A   +EK
Sbjct:    5 GTGYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK 179          
The following BLAST results are available for this feature:
BLAST of FC920548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSA3_DROME1.771e-2737.50Proteasome subunit alpha type-3 OS=Drosophila mela... [more]
PSA2_DICDI1.771e-2738.20Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSA7B_ARATH2.313e-2737.85Proteasome subunit alpha type-7-B OS=Arabidopsis t... [more]
PSA7A_ARATH2.313e-2737.85Proteasome subunit alpha type-7-A OS=Arabidopsis t... [more]
PSA2_XENLA3.021e-2739.11Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA3_MOUSE3.946e-2739.20Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSMA1_HALVO5.154e-2738.76Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSA7A_ORYSJ5.154e-2737.64Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7A_ORYSI5.154e-2737.64Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA3_RAT5.154e-2739.20Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionC32009G10EF RVDevelop1 Citrus clementina cDNA clone C32009G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920548 ID=FC920548; Name=FC920548; organism=Citrus clementina; type=EST; length=722bp
CCGGGGGATCCGACGAGTAGAACTGCCTGAAGAAGAAAATTGAAAGAGAG
GAATCACAGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGGAGGAT
ACGATCGCCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTCAAGTC
GAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATCGGTGT
TCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGACA
AGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAAAGTAC
CTTGGATTGCTGGCAACTGGAATGACAGCTGATGCAAGGACATTGGTTCA
GCAGGCAAGATATGAAGCCGCTGAGTTTCGCTTCAAATATGGATATGAAA
TGCCTGTGGATGTGTTAGCCAAATGGATTGCAGACAAATCACAAGTATAT
ACTCAACATGCTTATATGAGACCACTTGGTGTAGTTGCTATGGTTTTGAG
TATTGACGAAGAATGTGGACCTCGCCTCTTTAAGTGTGACCCTGCTGGCC
ATTTCTTTGGCCACAAGGCAACAAGTGCTGGATTGAAGGAGCAAGAGGCA
ATTAATTTCTTGGAGAAGAAGATGAAGAATGATCCTGCGTTTACCTTTCA
GAAACTGTGCAGACTGCAATTTCACCCTGCATCAGTCCTGCAGAAGATTT
TAGGCGAGTGAGATTGAGTTGG
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