FC920558

Overview
NameFC920558
Unique NameFC920558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920558_ssr5 microsatellite FC920558_ssr5:5..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14655 contig Ccv1_Contig14655:79..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920558 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.774e-40
Identity = 94/210 (44.76%), Postives = 132/210 (62.86%), Query Frame = 2 
Query:   80 LSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDVLNHESLVKAIKQ--VDVVISTVGHALLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVHGAVEPTKSTYDVKAKIRRAVEAEGIPYTYVESYFFDGYFLPNLLQPGATAPPRDKVVIFGDGNPKVYNKE-DDIGTYTIKAVDDPRTLNKTFTF 700
            L +GGTG+IG+FI +AS+  G+PTF+LVR   VS PSK+ ++  F++ G K++ G + + E + K +K+  +DVVIS VG A L DQ+ ++ AIK    +KRF PSEFG+DVDR    VEP  + Y  K  +RRAVE  GIP+T +       +   +   P    PP D+  I+GDGN K Y  + +DIG +T+K +DD RTLNK   F
Sbjct:   16 LVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRT-DPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYFIDGNDIGKFTMKTIDDIRTLNKNVHF 223
The following BLAST results are available for this feature:
BLAST of FC920558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN1.774e-4044.76Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionC32009H10EF RVDevelop1 Citrus clementina cDNA clone C32009H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920558 ID=FC920558; Name=FC920558; organism=Citrus clementina; type=EST; length=707bp
GGGGAATAATAATAATAATAATAATCATAAACAAACTCTCCGGAATTGAA
CTGAACGAGTTTCAGAAATGGCATCGATTCTATCCATCGGCGGGACAGGG
TATATCGGTAAATTCATCGTGGAAGCAAGCGTGAAAGCCGGCCACCCGAC
GTTCGTGCTCGTGAGGGAATCCACAGTCTCAGGTCCTTCCAAATCTCAGC
TCCTCGACCACTTCAAAAACCTCGGCGTCAAAATCGTTGTCGGAGATGTT
TTGAATCACGAGAGTTTGGTGAAGGCGATAAAACAAGTGGACGTGGTGAT
ATCGACAGTCGGTCACGCTTTATTAGCCGATCAGGTCAAGATTATTGCTG
CCATTAAAGAAGCCGGTAACGTTAAGAGATTCTTCCCATCGGAATTTGGA
AATGATGTTGATCGAGTCCATGGCGCCGTGGAGCCAACAAAATCGACGTA
TGACGTAAAGGCGAAAATCCGCCGAGCCGTTGAGGCAGAAGGCATTCCGT
ACACTTACGTAGAATCTTATTTTTTTGATGGCTACTTCCTCCCTAATTTG
TTGCAGCCTGGGGCCACTGCCCCCCCTAGGGATAAGGTTGTCATCTTCGG
CGATGGAAATCCAAAAGTTTATAACAAGGAAGATGATATTGGAACCTACA
CTATCAAAGCAGTTGATGATCCGAGAACCTTGAACAAAACCTTTACATTC
AGNCTCC
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