FC920559

Overview
NameFC920559
Unique NameFC920559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14160 contig Ccv1_Contig14160:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920559 vs. ExPASy Swiss-Prot
Match: GCP4_ARATH (Gamma-tubulin complex component 4 homolog OS=Arabidopsis thaliana GN=At3g53760 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 47/216 (21.76%), Postives = 91/216 (42.13%), Query Frame = 1
Query:   70 IALRSTAAAADPCHEDLTCSVERSSLLKRMATLKFVEIKTSSDG-VDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQ--VHQG--------ARAFNASGTAISRSSL-----LCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQY 669
            +A   T A  D     ++  +    +  R +    V  K S  G  +L    S+ G +  +L Y V WP+ +  +++ L+KY  VF+ L   K  + +L  +W   +HQ             N S +   R  +     +   M   I +L  Y+  +V+E  W V+   +  ++   E++  H  +L   + +  L +  + + ++ +  LCLQ+
Sbjct:  450 LAATKTIAEEDKYFSRVSLRMPSFGVTVRSSQADMVRSKVSLTGKANLTSDTSVDGWDAIALEYSVDWPMQLFFTQEVLSKYLKVFQYLIRLKRTQMELEKSWASVMHQDHIESAQHRKDGLNGSTSQQRRQGIRPMWRVREHMAFLIRNLQFYIQVDVIESQWKVLQTHIHDSQDFTELVGFHQEYLSALISQSFLDIGSVSRILDSIMKLCLQF 665          
BLAST of FC920559 vs. ExPASy Swiss-Prot
Match: GCP4_HUMAN (Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 40/155 (25.81%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  211 EQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAA 675
            E P S  G     LSYKVQWPL I+ +   L KY +VF+ L   + V+ +L   W +    +   ++ T   +  L    M   +++L +YL  +VLE  +  + +++ + +  + +   HD FL   L +  + L  +   +  +  LC  + +
Sbjct:  444 EAPAS--GWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIKWRLR-NHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCS 595          
BLAST of FC920559 vs. ExPASy Swiss-Prot
Match: GCP4_MOUSE (Gamma-tubulin complex component 4 OS=Mus musculus GN=Tubgcp4 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 37/149 (24.83%), Postives = 71/149 (47.65%), Query Frame = 1
Query:  229 TGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAA 675
            +G     LSYKVQWPL I+ +   L KY +VF+ L   + V+ +L   W +    +   ++ T   +  L    M   +++L +YL  +VLE  +  + +++ + +  + +   HD FL   L +  + L  +   +  +  LC  + +
Sbjct:  448 SGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAVKWRLR-NHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCS 595          
The following BLAST results are available for this feature:
BLAST of FC920559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
GCP4_ARATH1.730e-1121.76Gamma-tubulin complex component 4 homolog OS=Arabi... [more]
GCP4_HUMAN6.575e-1125.81Gamma-tubulin complex component 4 OS=Homo sapiens ... [more]
GCP4_MOUSE8.587e-1124.83Gamma-tubulin complex component 4 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC32009H11EF RVDevelop1 Citrus clementina cDNA clone C32009H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920559 ID=FC920559; Name=FC920559; organism=Citrus clementina; type=EST; length=707bp
ATAGCTCGTGAGGAACTCATGCCACAGCTTGATGAGATTACTGTGGAAAA
ACTGCAGTCTCTGCTAGACATTGCTCTGCGTTCCACTGCTGCAGCAGCAG
ATCCTTGTCATGAGGACCTAACATGTTCTGTCGAGAGATCATCCTTGCTT
AAAAGAATGGCCACACTCAAATTTGTTGAAATTAAGACTTCCTCTGATGG
CGTGGATTTAGAGCAGCCAGTGAGCATTACTGGTCTTGAGACGTTTTCTT
TAAGCTACAAGGTCCAGTGGCCATTATCTATTGTTATATCAAGAAAAGCC
CTAACAAAGTATCAGATGGTTTTTCGCTTACTTTTTCACTGTAAACATGT
AGAGCGCCAGCTGTGTGGGGCTTGGCAAGTGCACCAAGGAGCTCGTGCCT
TTAACGCAAGTGGAACTGCTATCTCTAGATCATCTCTGCTCTGCCGCAGC
ATGCTTAAGTTTATTAATAGCCTTCTTCATTATTTGACATTTGAGGTTCT
TGAACCCAATTGGCATGTGATGCATAATAGACTTCAAACTGCAAAGAGCA
TAGATGAGGTCATACAACATCATGATTTTTTCCTTGACAAGTGTCTCAGA
GAATGCTTGCTTCATTTGCCTGATCTTCTCAAGAAGGTGGAGAGGCTGAA
ATCATTGTGCCTGCAGTATGCGGCCGCAACTCAGTGGTTGATATCATCTT
CTATTGA
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