FC920560

Overview
NameFC920560
Unique NameFC920560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 2.912e-47
Identity = 88/142 (61.97%), Postives = 114/142 (80.28%), Query Frame = 1
Query:  229 KEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            KE     D E  ++  G  K H++++F+GHVDAGKST GG IL+L+G VD RT++KYE+EAKD  R+ WY++++MDTN+EER  GKT+EVG+A+FET+  R+TILDAPGHK YV  MI GASQAD+G+LVISARKGE+ETGF
Sbjct:  269 KEQEDEVDEEVVKDMFGG-KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFETDKRRYTILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGF 409          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 3.804e-47
Identity = 88/123 (71.54%), Postives = 106/123 (86.18%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            K H+N+VFIGHVDAGKST GG ILFL+G VD RT++K E+EAK+  +ESWY+++ +D+  EER KGKTVEVGRA+FETE  RF++LDAPGHK YV NMI+GASQADIGVLVISAR+GEFE GF
Sbjct:  236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGF 358          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: ERF3_CANAL (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida albicans GN=SUP35 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.804e-47
Identity = 83/123 (67.48%), Postives = 107/123 (86.99%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            K H++++F+GHVDAGKST GG IL+L+G VD RT++KYE+EAKD  R+ WY++++MDTN+EER  GKT+EVG+A+FET+  R+TILDAPGHK YV  MI GASQAD+G+LVISARKGE+ETGF
Sbjct:  290 KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFETDKRRYTILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGF 412          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: ERF3_PICPI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Pichia pinus GN=SUP2 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.492e-46
Identity = 81/123 (65.85%), Postives = 106/123 (86.18%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            K H++++F+GHVDAGKST GG +LFL+G VD RT++KYE+EAKD  R+ WY+++IMDTN+EER  GKT+EVG+++FET+  R+TILDAPGHK Y+  MI GASQAD+GVLVIS+RKGE+E GF
Sbjct:  316 KDHMSIIFMGHVDAGKSTMGGNLLFLTGAVDKRTVEKYEREAKDAGRQGWYLSWIMDTNKEERNDGKTIEVGKSYFETDKRRYTILDAPGHKLYISEMIGGASQADVGVLVISSRKGEYEAGF 438          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.697e-35
Identity = 71/149 (47.65%), Postives = 102/149 (68.46%), Query Frame = 1
Query:  208 PEPKVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            P P  K  ++    D +++ E     K+ LN+V IGHVDAGKST  G +L+L G V+ RT+ KYE+E+K   + S+  A+++D   EER +G T++VG   FET+T   T++DAPGHK ++PNMI+GA+QAD+ VLV+ A +GEFE GF
Sbjct:  234 PTPVKKSGKLRQQIDIKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGDVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETKTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGF 382          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 70/149 (46.98%), Postives = 101/149 (67.79%), Query Frame = 1
Query:  208 PEPKVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            P P  K  ++    D +++ E     K+ LN+V IGHVDAGKST  G +L+L G ++ RT+ KYE+E+K   + S+  A+++D   EER +G T++VG   FET T   T++DAPGHK ++PNMI+GA+QAD+ VLV+ A +GEFE GF
Sbjct:  232 PAPVKKSGKLRQQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGF 380          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 71/149 (47.65%), Postives = 101/149 (67.79%), Query Frame = 1
Query:  208 PEPKVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            P P  K  ++    D +++ E     K+ LN+V IGHVDAGKST  G +L+L G V+ RT+ KYE+E+K   + S+  A+++D   EER +G T++VG   FET T   T++DAPGHK ++PNMI+GA+QAD+ VLV+ A +GEFE GF
Sbjct:  230 PTPVRKSGKLRQQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGF 378          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 70/149 (46.98%), Postives = 101/149 (67.79%), Query Frame = 1
Query:  208 PEPKVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            P P  K  ++    D +++ E     K+ LN+V IGHVDAGKST  G +L+L G ++ RT+ KYE+E+K   + S+  A+++D   EER +G T++VG   FET T   T++DAPGHK ++PNMI+GA+QAD+ VLV+ A +GEFE GF
Sbjct:  232 PAPVKKSGKLRQQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGF 380          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.823e-34
Identity = 71/149 (47.65%), Postives = 100/149 (67.11%), Query Frame = 1
Query:  208 PEPKVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            P P  K  ++    D ++  E     K+ LN+V IGHVDAGKST  G +L+L G V+ RT+ KYE+E+K   + S+  A+++D   EER +G T++VG   FET T   T++DAPGHK ++PNMI+GA+QAD+ VLV+ A +GEFE GF
Sbjct:  227 PTPLRKSGKLRQQIDVKAGLEKRQGGKQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGF 375          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 67/122 (54.92%), Postives = 93/122 (76.23%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            K HLN+V IGH+D GKST  G++L+  G VD R IQ+YE+EAK   RE+W  A+++D  +EER KG T+++G   FET+   FT++DAPGH+ +V NMI+GASQAD+ +LV+SA++GEFE G
Sbjct:    5 KPHLNLVVIGHIDHGKSTLMGRLLYEIGAVDPRLIQQYEEEAKKMGRETWKYAWVLDKLKEEREKGITIDLGFYKFETKKYFFTLIDAPGHRDFVKNMITGASQADVALLVVSAKEGEFEAG 126          
The following BLAST results are available for this feature:
BLAST of FC920560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ERF3_CANMA2.912e-4761.97Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_SCHPO3.804e-4771.54Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANAL3.804e-4767.48Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_PICPI5.492e-4665.85Eukaryotic peptide chain release factor GTP-bindin... [more]
HBS1L_BOVIN5.697e-3547.65HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1[more]
HBS1L_PONAB1.269e-3446.98HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_MOUSE1.269e-3447.65HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_HUMAN1.269e-3446.98HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]
HBS1L_RAT4.823e-3447.65HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
EF1A_THEPD1.833e-3354.92Elongation factor 1-alpha OS=Thermofilum pendens (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32010A01EF RVDevelop1 Citrus clementina cDNA clone C32010A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920560 ID=FC920560; Name=FC920560; organism=Citrus clementina; type=EST; length=654bp
GGGGGAATAAAAAGAGAAAGAAGAGAAACCCTAGGTGCCTTCATCACTAT
GGATATTGAGGAGGATATCCGCTCATTACAGCTTGACTCCGCAGAAGAGA
ATAATGGGGTGGTCAATCCTGGAGATGCAAGGCCAGAAGAAGTTGAGGTG
GTGGATAAGATGGAGGAAGATTCAGAGGAGGTGCAAGCAGTATCCCAGCC
TGTTCATCCTGAGCCTAAAGTGAAACACAAGGAAGTATCTGCGGTGGAAG
ATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAGCGACACTTGAAT
GTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTACCACTGGAGGCCA
GATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAATTCAAAAATATG
AGAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTATATGGCGTATATT
ATGGACACTAATGAAGAGGAGAGGATCAAGGGTAAAACAGTAGAAGTTGG
AAGAGCTCACTTTGAAACTGAGACTACTAGATTTACAATTTTGGATGCGC
CGGGTCACAAGAGTTATGTCCCTAATATGATTAGTGGGGCATCTCAAGCT
GATATTGGTGTACTGGTAATTTCTGCTCGAAAAGGAGAGTTTGAAACTGG
GTTT
back to top