FC920560
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.740e-27 Identity = 59/121 (48.76%), Postives = 81/121 (66.94%), Query Frame = 1 Query: 286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFET 648 K HLN+ IGHVD GKST G++L+ +G VD++ ++ E+ AK +E + A+I+D +EER +G T+E FET TI+D PGH+ ++ NMI GASQAD + VISAR GEFET Sbjct: 15 KPHLNLAVIGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFIKNMIVGASQADAALFVISARPGEFET 135
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.740e-27 Identity = 58/121 (47.93%), Postives = 82/121 (67.77%), Query Frame = 1 Query: 286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFET 648 K H+N+ +GHVD GKST G++L+ +G VD++ ++ E+ AK +E + A+I+D +EER +G T+E FET+ TI+D PGH+ +V NMI GASQAD + VISAR GEFET Sbjct: 15 KPHINLAVVGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETQKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFET 135
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.740e-27 Identity = 54/118 (45.76%), Postives = 85/118 (72.03%), Query Frame = 1 Query: 283 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 636 +K H+N+ IGH+D GKST G++++ +G V I+KY++EAK K +ES+ A++MD+ +EER +G T+++ F+T+ FT++D PGH+ +V NMI+GASQAD VLV++A G Sbjct: 4 DKPHMNLAVIGHIDHGKSTFVGRLMYDAGAVPAHIIEKYKEEAKQKGKESFAFAWVMDSLKEERERGITIDIAHKRFDTDKFYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDG 121
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.740e-27 Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = 1 Query: 286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFE 645 K H+N+ IGH+D GKSTT G+ILF +G V + Y+KEA+ K + ++ A++MD+ +EER +G T+++ FET FT++D PGH+ +V NMI+GASQAD ++V+S +G E Sbjct: 5 KPHMNLAVIGHIDHGKSTTVGRILFETGVVQQHILDGYKKEAESKGKATFEFAWVMDSLKEERERGITIDIAHKKFETPKYNFTVVDCPGHRDFVKNMITGASQADAAIIVVSGTEGPME 124
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.740e-27 Identity = 54/125 (43.20%), Postives = 84/125 (67.20%), Query Frame = 1 Query: 277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651 G K H+++V IGHVD+GKSTT G +++ G +D R I+ +EKEA + ++ S+ A+++D + ER +G T+++ FET T++DAPGH+ ++ NMI+G SQAD VL+I + G FE G Sbjct: 2 GKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIESFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYSCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAG 126
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.272e-26 Identity = 54/125 (43.20%), Postives = 84/125 (67.20%), Query Frame = 1 Query: 277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651 G K H+N+V IGHVD+GKSTT +++ G +D R I+++EKEA + ++ S+ A+++D + ER +G T+++ FET T++DAPGH+ ++ NMI+G SQAD VL+I + G FE G Sbjct: 2 GKEKVHINIVVIGHVDSGKSTTTVHVIYKLGGIDKRVIERFEKEADEMNKRSFKYAWLLDKLKAERERGITIDIALLKFETTKYYSTVMDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAG 126
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.272e-26 Identity = 57/117 (48.72%), Postives = 79/117 (67.52%), Query Frame = 1 Query: 286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 636 K H+NVVFIGHVD GKSTT G++ + G + + ++K +EAK +E + AY+MD +EER +G T+++ ET TI+DAPGHK +V NMI+GASQAD VLV++A G Sbjct: 5 KPHINVVFIGHVDHGKSTTVGRLKYDLGLIPESELEKIREEAKKYGKEEFVFAYLMDRQKEERARGVTIDIAHTELETPHNYITIVDAPGHKDFVKNMITGASQADAAVLVVAADDG 121
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.272e-26 Identity = 53/125 (42.40%), Postives = 85/125 (68.00%), Query Frame = 1 Query: 277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651 G K H+++V IGHVD+GKSTT G +++ G +D R I+++EKEA + ++ S+ A+++D + ER +G T+++ FET T++DAPGH+ ++ NMI+G SQAD VL+I + G F+ G Sbjct: 2 GKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYSCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGVFQAG 126
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.661e-26 Identity = 54/122 (44.26%), Postives = 83/122 (68.03%), Query Frame = 1 Query: 280 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFE 645 N+K H+N+ IGH+D GKSTT G+++F +G V I+ + KEA+ K + S+ A++MD +EER +G T+++ F+T FT++D PGH+ +V NMI+GASQAD +LV++A G E Sbjct: 3 NDKPHMNLAVIGHIDHGKSTTVGRLMFETGAVPAHIIENFRKEAESKGKGSFEFAWVMDNLKEERERGITIDIAHKRFDTAKFYFTVVDCPGHRDFVKNMITGASQADAAILVVAAPDGVME 124
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.661e-26 Identity = 54/109 (49.54%), Postives = 80/109 (73.39%), Query Frame = 1 Query: 295 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVI 621 LNV FIGHVDAGKSTT G++L+ SG +D + ++K ++EA+++ + + AY+MD +EER +G T++V FET+ TI+D PGH+ ++ NMI+GASQAD VLV+ Sbjct: 8 LNVAFIGHVDAGKSTTVGRLLYDSGAIDPQLLEKLKREAQERGKAGFEFAYVMDNLKEERERGVTIDVAHKKFETQKYEVTIVDCPGHRDFIKNMITGASQADAAVLVV 116 The following BLAST results are available for this feature:
BLAST of FC920560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920560 ID=FC920560; Name=FC920560; organism=Citrus clementina; type=EST; length=654bpback to top |