FC920560

Overview
NameFC920560
Unique NameFC920560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.740e-27
Identity = 59/121 (48.76%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFET 648
            K HLN+  IGHVD GKST  G++L+ +G VD++  ++ E+ AK   +E +  A+I+D  +EER +G T+E     FET     TI+D PGH+ ++ NMI GASQAD  + VISAR GEFET
Sbjct:   15 KPHLNLAVIGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFIKNMIVGASQADAALFVISARPGEFET 135          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.740e-27
Identity = 58/121 (47.93%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFET 648
            K H+N+  +GHVD GKST  G++L+ +G VD++  ++ E+ AK   +E +  A+I+D  +EER +G T+E     FET+    TI+D PGH+ +V NMI GASQAD  + VISAR GEFET
Sbjct:   15 KPHINLAVVGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETQKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFET 135          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.740e-27
Identity = 54/118 (45.76%), Postives = 85/118 (72.03%), Query Frame = 1
Query:  283 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 636
            +K H+N+  IGH+D GKST  G++++ +G V    I+KY++EAK K +ES+  A++MD+ +EER +G T+++    F+T+   FT++D PGH+ +V NMI+GASQAD  VLV++A  G
Sbjct:    4 DKPHMNLAVIGHIDHGKSTFVGRLMYDAGAVPAHIIEKYKEEAKQKGKESFAFAWVMDSLKEERERGITIDIAHKRFDTDKFYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDG 121          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.740e-27
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFE 645
            K H+N+  IGH+D GKSTT G+ILF +G V    +  Y+KEA+ K + ++  A++MD+ +EER +G T+++    FET    FT++D PGH+ +V NMI+GASQAD  ++V+S  +G  E
Sbjct:    5 KPHMNLAVIGHIDHGKSTTVGRILFETGVVQQHILDGYKKEAESKGKATFEFAWVMDSLKEERERGITIDIAHKKFETPKYNFTVVDCPGHRDFVKNMITGASQADAAIIVVSGTEGPME 124          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.740e-27
Identity = 54/125 (43.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+++V IGHVD+GKSTT G +++  G +D R I+ +EKEA + ++ S+  A+++D  + ER +G T+++    FET     T++DAPGH+ ++ NMI+G SQAD  VL+I +  G FE G
Sbjct:    2 GKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIESFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYSCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.272e-26
Identity = 54/125 (43.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT   +++  G +D R I+++EKEA + ++ S+  A+++D  + ER +G T+++    FET     T++DAPGH+ ++ NMI+G SQAD  VL+I +  G FE G
Sbjct:    2 GKEKVHINIVVIGHVDSGKSTTTVHVIYKLGGIDKRVIERFEKEADEMNKRSFKYAWLLDKLKAERERGITIDIALLKFETTKYYSTVMDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.272e-26
Identity = 57/117 (48.72%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 636
            K H+NVVFIGHVD GKSTT G++ +  G + +  ++K  +EAK   +E +  AY+MD  +EER +G T+++     ET     TI+DAPGHK +V NMI+GASQAD  VLV++A  G
Sbjct:    5 KPHINVVFIGHVDHGKSTTVGRLKYDLGLIPESELEKIREEAKKYGKEEFVFAYLMDRQKEERARGVTIDIAHTELETPHNYITIVDAPGHKDFVKNMITGASQADAAVLVVAADDG 121          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.272e-26
Identity = 53/125 (42.40%), Postives = 85/125 (68.00%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+++V IGHVD+GKSTT G +++  G +D R I+++EKEA + ++ S+  A+++D  + ER +G T+++    FET     T++DAPGH+ ++ NMI+G SQAD  VL+I +  G F+ G
Sbjct:    2 GKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYSCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGVFQAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.661e-26
Identity = 54/122 (44.26%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  280 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFE 645
            N+K H+N+  IGH+D GKSTT G+++F +G V    I+ + KEA+ K + S+  A++MD  +EER +G T+++    F+T    FT++D PGH+ +V NMI+GASQAD  +LV++A  G  E
Sbjct:    3 NDKPHMNLAVIGHIDHGKSTTVGRLMFETGAVPAHIIENFRKEAESKGKGSFEFAWVMDNLKEERERGITIDIAHKRFDTAKFYFTVVDCPGHRDFVKNMITGASQADAAILVVAAPDGVME 124          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.661e-26
Identity = 54/109 (49.54%), Postives = 80/109 (73.39%), Query Frame = 1
Query:  295 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVI 621
            LNV FIGHVDAGKSTT G++L+ SG +D + ++K ++EA+++ +  +  AY+MD  +EER +G T++V    FET+    TI+D PGH+ ++ NMI+GASQAD  VLV+
Sbjct:    8 LNVAFIGHVDAGKSTTVGRLLYDSGAIDPQLLEKLKREAQERGKAGFEFAYVMDNLKEERERGVTIDVAHKKFETQKYEVTIVDCPGHRDFIKNMITGASQADAAVLVV 116          
The following BLAST results are available for this feature:
BLAST of FC920560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_PYRIL9.740e-2748.76Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_PYRCJ9.740e-2747.93Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_METMA9.740e-2745.76Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_METLZ9.740e-2745.00Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A2_HORVU9.740e-2743.20Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A_PEA1.272e-2643.20Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_NANEQ1.272e-2648.72Elongation factor 1-alpha OS=Nanoarchaeum equitans... [more]
EF1A1_HORVU1.272e-2642.40Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_METPE1.661e-2644.26Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_METJA1.661e-2649.54Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionC32010A01EF RVDevelop1 Citrus clementina cDNA clone C32010A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920560 ID=FC920560; Name=FC920560; organism=Citrus clementina; type=EST; length=654bp
GGGGGAATAAAAAGAGAAAGAAGAGAAACCCTAGGTGCCTTCATCACTAT
GGATATTGAGGAGGATATCCGCTCATTACAGCTTGACTCCGCAGAAGAGA
ATAATGGGGTGGTCAATCCTGGAGATGCAAGGCCAGAAGAAGTTGAGGTG
GTGGATAAGATGGAGGAAGATTCAGAGGAGGTGCAAGCAGTATCCCAGCC
TGTTCATCCTGAGCCTAAAGTGAAACACAAGGAAGTATCTGCGGTGGAAG
ATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAGCGACACTTGAAT
GTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTACCACTGGAGGCCA
GATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAATTCAAAAATATG
AGAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTATATGGCGTATATT
ATGGACACTAATGAAGAGGAGAGGATCAAGGGTAAAACAGTAGAAGTTGG
AAGAGCTCACTTTGAAACTGAGACTACTAGATTTACAATTTTGGATGCGC
CGGGTCACAAGAGTTATGTCCCTAATATGATTAGTGGGGCATCTCAAGCT
GATATTGGTGTACTGGTAATTTCTGCTCGAAAAGGAGAGTTTGAAACTGG
GTTT
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