FC920560

Overview
NameFC920560
Unique NameFC920560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.313e-31
Identity = 63/125 (50.40%), Postives = 88/125 (70.40%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVDAGKSTT G +++  G +D R I+KYEKEA +  ++S+  A++MD  + ER +G T+++    FET    FTI+DAPGH+ ++ NMI+G SQAD  VLVI++  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEASEMGKQSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQADCAVLVIASPTGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.715e-31
Identity = 68/124 (54.84%), Postives = 89/124 (71.77%), Query Frame = 1
Query:  280 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            + K HLN+V IGHVD GKST  G IL+  G VD +TIQ  E+EAK + +ES+  A+++D  +EER +G T+ +    FET    FTI+DAPGH+ +V NMI+GASQAD  +LV+SARKGEFE G
Sbjct:    3 SGKPHLNLVVIGHVDHGKSTLVGHILYRLGLVDQKTIQMLEEEAKKRGKESFKFAWLLDKLKEERERGVTIALTYMKFETRRYIFTIIDAPGHRDFVKNMITGASQADAALLVVSARKGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.926e-31
Identity = 65/122 (53.28%), Postives = 91/122 (74.59%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            K H+N+V IGHVD GKST  G +L+  G VD++TI+  E+EAK K +ES+  A+++D  +EER +G T+++    FET+   FTI+DAPGH+ +V NMI+GASQAD  +LV+SAR+GEFE G
Sbjct:    5 KPHINLVVIGHVDHGKSTLVGHLLYRLGFVDEKTIKMLEEEAKKKGKESFKYAWLLDRLKEERERGVTIDLTFVKFETKKYYFTIIDAPGHRDFVKNMITGASQADAAILVVSARRGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.821e-31
Identity = 64/122 (52.46%), Postives = 88/122 (72.13%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            K HLN+V IGHVD GKST  G IL+  G  D++T++  E+E+K   +ES+  A+++D  +EER +G T+ +    FET+   FTI+DAPGH+ +V NMI+GASQAD  +LV+SARKGEFE G
Sbjct:    6 KPHLNIVIIGHVDHGKSTMTGHILYRLGYFDEKTVKMIEEESKKMGKESFKFAWLLDRMKEERERGVTISLSYMKFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAG 127          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 59/125 (47.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K HLN+V IGHVD+GKSTT G +++  G +D RTI+K+EKE+ +  + S+  A+++D  + ER +G T+++    FETE   +TI+DAPGH+ ++ NMI+G SQAD  +L+I++  GEFE G
Sbjct:    2 GKEKEHLNLVVIGHVDSGKSTTTGHLIYKLGGIDARTIEKFEKESAEMGKASFKYAWVLDKLKAERERGITIDIALWKFETENRHYTIIDAPGHRDFIKNMITGTSQADAAILIIASGTGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.477e-30
Identity = 60/125 (48.00%), Postives = 88/125 (70.40%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+NVV IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     T++DAPGH+ ++ NMI+G SQAD G+L+I+A  GEFE G
Sbjct:    2 GKEKTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYHVTVIDAPGHRDFIKNMITGTSQADCGILIIAAGTGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 57/122 (46.72%), Postives = 88/122 (72.13%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKE+ +  + S+  A+++D  + ER +G T+++    FET    FTI+DAPGH+ ++ NMI+G SQAD+ +L+++A  GEFE G
Sbjct:    5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDQRTIEKFEKESAEMGKGSFKYAWVLDNLKAERERGITIDISLWKFETSKYYFTIIDAPGHRDFIKNMITGTSQADVAILIVAAGTGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 61/122 (50.00%), Postives = 91/122 (74.59%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            K H+N+V IGHVD GKST  G +L+  G ++++ +++ E++AK + +ES+  A+I+D  +EER +G T+++    FET+   FTI+DAPGH+ +V NMI+GASQAD  +LV+SARKGEFE G
Sbjct:    4 KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAG 125          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 58/125 (46.40%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K+H+++V IGHVD+GKSTT G +++  G +D R I+K+EKEA +  + S+  A+++D  + ER +G T+++    FET+   FTI+DAPGH+ ++ NMI+G SQAD+ +LVI++  GEFE G
Sbjct:    2 GKEKQHVSIVVIGHVDSGKSTTTGHLIYKCGGIDKRAIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETDKYNFTIIDAPGHRDFIKNMITGTSQADLAILVIASPPGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 59/125 (47.20%), Postives = 88/125 (70.40%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA++  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 126          
The following BLAST results are available for this feature:
BLAST of FC920560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_DICDI1.313e-3150.40Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A_STAMF1.715e-3154.84Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_HYPBU2.926e-3153.28Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_DESMO3.821e-3152.46Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A1_EUPCR1.452e-3047.20Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_ABSGL2.477e-3048.00Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A_ENTHI4.225e-3046.72Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_AERPE4.225e-3050.00Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1AC_PORPU4.225e-3046.40Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A_BOMMO5.518e-3047.20Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32010A01EF RVDevelop1 Citrus clementina cDNA clone C32010A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920560 ID=FC920560; Name=FC920560; organism=Citrus clementina; type=EST; length=654bp
GGGGGAATAAAAAGAGAAAGAAGAGAAACCCTAGGTGCCTTCATCACTAT
GGATATTGAGGAGGATATCCGCTCATTACAGCTTGACTCCGCAGAAGAGA
ATAATGGGGTGGTCAATCCTGGAGATGCAAGGCCAGAAGAAGTTGAGGTG
GTGGATAAGATGGAGGAAGATTCAGAGGAGGTGCAAGCAGTATCCCAGCC
TGTTCATCCTGAGCCTAAAGTGAAACACAAGGAAGTATCTGCGGTGGAAG
ATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAGCGACACTTGAAT
GTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTACCACTGGAGGCCA
GATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAATTCAAAAATATG
AGAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTATATGGCGTATATT
ATGGACACTAATGAAGAGGAGAGGATCAAGGGTAAAACAGTAGAAGTTGG
AAGAGCTCACTTTGAAACTGAGACTACTAGATTTACAATTTTGGATGCGC
CGGGTCACAAGAGTTATGTCCCTAATATGATTAGTGGGGCATCTCAAGCT
GATATTGGTGTACTGGTAATTTCTGCTCGAAAAGGAGAGTTTGAAACTGG
GTTT
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