FC920560

Overview
NameFC920560
Unique NameFC920560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 58/125 (46.40%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K+H+++V IGHVD+GKSTT G +++  G ++ R I+K+EKEA +  + S+  A+++D  + ER +G T+++    FETE   FTI+DAPGH+ ++ NMI+G SQAD+ +LVI++  GEFE G
Sbjct:    2 GKEKQHVSIVVIGHVDSGKSTTTGHLIYKCGGIEKRAIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETEKYSFTIIDAPGHRDFIKNMITGTSQADLAILVIASPPGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 9.412e-30
Identity = 58/125 (46.40%), Postives = 89/125 (71.20%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V +GHVDAGKST  G +++  G +D RTI+K+EKEA D  + S+  A+++D  + ER +G T+++    FE+  + FTI+DAPGH+ ++ NMI+G SQAD  +L+I++ +GEFE G
Sbjct:    2 GKEKVHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAADIGKASFKYAWVLDKLKAERERGITIDIALWKFESPKSVFTIIDAPGHRDFIKNMITGTSQADAAILIIASAQGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.412e-30
Identity = 58/122 (47.54%), Postives = 90/122 (73.77%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            K HLN+V IGHVD+GKST+ G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++   +FET  + FTI+DAPGH+ ++ NMI+G SQAD  +L+I++ +GEFE G
Sbjct:    5 KNHLNLVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWNFETAKSVFTIIDAPGHRDFIKNMITGTSQADAAILIIASGQGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.412e-30
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+NVV IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     T++DAPGH+ ++ NMI+G SQAD  +L+I+A  GEFE G
Sbjct:    2 GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKSERERGITIDIALWKFETPKYMVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.412e-30
Identity = 59/125 (47.20%), Postives = 88/125 (70.40%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA++  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 61/122 (50.00%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            K H+N++ IGHVD GKST  G +L+  G VD++T++  E+EAK + +ES+  A+++D  +EER +G T+++    FET    FTI+DAPGH+ ++ NMI+GASQAD  +LV+SAR GEFE G
Sbjct:    6 KPHMNLIVIGHVDHGKSTLVGHLLYELGFVDEKTLKMLEEEAKKRGKESFKYAWLLDKLKEERERGVTIDLTFMKFETPKYYFTIIDAPGHRDFIKNMITGASQADAAILVVSARPGEFEAG 127          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126          
The following BLAST results are available for this feature:
BLAST of FC920560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_PORYE7.206e-3046.40Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1A_TRYBB9.412e-3046.40Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_STYLE9.412e-3047.54Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A_AURPU9.412e-3047.20Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A2_DROME9.412e-3047.20Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_IGNH41.229e-2950.00Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_CHICK1.229e-2947.20Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A3_HUMAN1.229e-2947.20Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A2_RAT1.229e-2947.20Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_RABIT1.229e-2947.20Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionC32010A01EF RVDevelop1 Citrus clementina cDNA clone C32010A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920560 ID=FC920560; Name=FC920560; organism=Citrus clementina; type=EST; length=654bp
GGGGGAATAAAAAGAGAAAGAAGAGAAACCCTAGGTGCCTTCATCACTAT
GGATATTGAGGAGGATATCCGCTCATTACAGCTTGACTCCGCAGAAGAGA
ATAATGGGGTGGTCAATCCTGGAGATGCAAGGCCAGAAGAAGTTGAGGTG
GTGGATAAGATGGAGGAAGATTCAGAGGAGGTGCAAGCAGTATCCCAGCC
TGTTCATCCTGAGCCTAAAGTGAAACACAAGGAAGTATCTGCGGTGGAAG
ATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAGCGACACTTGAAT
GTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTACCACTGGAGGCCA
GATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAATTCAAAAATATG
AGAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTATATGGCGTATATT
ATGGACACTAATGAAGAGGAGAGGATCAAGGGTAAAACAGTAGAAGTTGG
AAGAGCTCACTTTGAAACTGAGACTACTAGATTTACAATTTTGGATGCGC
CGGGTCACAAGAGTTATGTCCCTAATATGATTAGTGGGGCATCTCAAGCT
GATATTGGTGTACTGGTAATTTCTGCTCGAAAAGGAGAGTTTGAAACTGG
GTTT
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