FC920560

Overview
NameFC920560
Unique NameFC920560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EFTU_THEEB (Elongation factor Tu OS=Thermosynechococcus elongatus (strain BP-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 40/117 (34.19%), Postives = 57/117 (48.72%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 636
            K H+NV  IGHVD GK+T    I            +KY++               +D   EE+ +G T+      +ETE   +  +D PGH  YV NMI+GA+Q D  +LV++A  G
Sbjct:   10 KPHVNVGTIGHVDHGKTTLTAAITMTLAAQGKAQARKYDE---------------IDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 111          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EFTU_THEAB (Elongation factor Tu OS=Thermosipho africanus (strain TCF52B) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 41/121 (33.88%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  283 NKRHLNVVFIGHVDAGKSTTGGQI---LFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 636
            +K HLNV  IGH+D GK+T    I   L   G+ D    ++ +K  ++K R                  G T+ +    +ETET  +  +D PGH  Y+ NMI+GA+Q D  +LV++A  G
Sbjct:    9 SKPHLNVGTIGHIDHGKTTLTAAITKYLSFFGRADYTPYEQIDKAPEEKER------------------GITINISHIEYETETRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDG 111          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EFTU_SYNS9 (Elongation factor Tu OS=Synechococcus sp. (strain CC9902) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 41/118 (34.75%), Postives = 57/118 (48.31%), Query Frame = 1
Query:  283 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 636
            NK H+N+  IGHVD GK+T    I  +  +     +Q Y                 +D   EER +G T+      +ETE   +  +D PGH  YV NMI+GA+Q D  +LV +A  G
Sbjct:    9 NKPHVNIGTIGHVDHGKTTLTAAITNVLAKKGQAQVQNYAD---------------IDGAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDG 111          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJB (Elongation factor Tu OS=Synechococcus sp. GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 39/117 (33.33%), Postives = 58/117 (49.57%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 636
            K H+NV  IGHVD GK+T    I      +   T ++Y++               +D   EE+ +G T+      ++T    +  +D PGH  YV NMI+GA+Q D  +LV+SA  G
Sbjct:   10 KPHVNVGTIGHVDHGKTTLTAAITTTLAALGQATAKRYDE---------------IDAAPEEKARGITINTAHVEYQTANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EFTU_STRZT (Elongation factor Tu OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 42/124 (33.87%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  265 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 636
            +E    +K H+N+  IGHVD GK+T    I  +      R +     + KD +         +D   EER +G T+      +ETE   +  +DAPGH  YV NMI+GA+Q D  +LV+++  G
Sbjct:    3 KEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLA----RRLPSSVNQPKDYAS--------IDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDG 114          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EFTU_STRZP (Elongation factor Tu OS=Streptococcus pneumoniae (strain P1031) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 42/124 (33.87%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  265 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 636
            +E    +K H+N+  IGHVD GK+T    I  +      R +     + KD +         +D   EER +G T+      +ETE   +  +DAPGH  YV NMI+GA+Q D  +LV+++  G
Sbjct:    3 KEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLA----RRLPSSVNQPKDYAS--------IDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDG 114          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EFTU_STRZJ (Elongation factor Tu OS=Streptococcus pneumoniae (strain JJA) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 42/124 (33.87%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  265 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 636
            +E    +K H+N+  IGHVD GK+T    I  +      R +     + KD +         +D   EER +G T+      +ETE   +  +DAPGH  YV NMI+GA+Q D  +LV+++  G
Sbjct:    3 KEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLA----RRLPSSVNQPKDYAS--------IDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDG 114          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EFTU_STRSY (Elongation factor Tu OS=Streptococcus suis (strain 05ZYH33) GN=tuf PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 42/124 (33.87%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  265 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 636
            +E    +K H+N+  IGHVD GK+T    I  +      R +     + KD +         +D   EER +G T+      +ETE   +  +DAPGH  YV NMI+GA+Q D  +LV+++  G
Sbjct:    3 KEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLA----RRLPSSVNQPKDYAS--------IDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDG 114          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EFTU_STRS2 (Elongation factor Tu OS=Streptococcus suis (strain 98HAH33) GN=tuf PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 42/124 (33.87%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  265 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 636
            +E    +K H+N+  IGHVD GK+T    I  +      R +     + KD +         +D   EER +G T+      +ETE   +  +DAPGH  YV NMI+GA+Q D  +LV+++  G
Sbjct:    3 KEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLA----RRLPSSVNQPKDYAS--------IDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDG 114          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EFTU_STRR6 (Elongation factor Tu OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 42/124 (33.87%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  265 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 636
            +E    +K H+N+  IGHVD GK+T    I  +      R +     + KD +         +D   EER +G T+      +ETE   +  +DAPGH  YV NMI+GA+Q D  +LV+++  G
Sbjct:    3 KEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLA----RRLPSSVNQPKDYAS--------IDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDG 114          
The following BLAST results are available for this feature:
BLAST of FC920560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_THEEB3.042e-1234.19Elongation factor Tu OS=Thermosynechococcus elonga... [more]
EFTU_THEAB3.042e-1233.88Elongation factor Tu OS=Thermosipho africanus (str... [more]
EFTU_SYNS93.042e-1234.75Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNJB3.042e-1233.33Elongation factor Tu OS=Synechococcus sp. GN=tuf P... [more]
EFTU_STRZT3.042e-1233.87Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRZP3.042e-1233.87Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRZJ3.042e-1233.87Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRSY3.042e-1233.87Elongation factor Tu OS=Streptococcus suis (strain... [more]
EFTU_STRS23.042e-1233.87Elongation factor Tu OS=Streptococcus suis (strain... [more]
EFTU_STRR63.042e-1233.87Elongation factor Tu OS=Streptococcus pneumoniae (... [more]

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Properties
Property NameValue
Genbank descriptionC32010A01EF RVDevelop1 Citrus clementina cDNA clone C32010A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920560 ID=FC920560; Name=FC920560; organism=Citrus clementina; type=EST; length=654bp
GGGGGAATAAAAAGAGAAAGAAGAGAAACCCTAGGTGCCTTCATCACTAT
GGATATTGAGGAGGATATCCGCTCATTACAGCTTGACTCCGCAGAAGAGA
ATAATGGGGTGGTCAATCCTGGAGATGCAAGGCCAGAAGAAGTTGAGGTG
GTGGATAAGATGGAGGAAGATTCAGAGGAGGTGCAAGCAGTATCCCAGCC
TGTTCATCCTGAGCCTAAAGTGAAACACAAGGAAGTATCTGCGGTGGAAG
ATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAGCGACACTTGAAT
GTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTACCACTGGAGGCCA
GATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAATTCAAAAATATG
AGAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTATATGGCGTATATT
ATGGACACTAATGAAGAGGAGAGGATCAAGGGTAAAACAGTAGAAGTTGG
AAGAGCTCACTTTGAAACTGAGACTACTAGATTTACAATTTTGGATGCGC
CGGGTCACAAGAGTTATGTCCCTAATATGATTAGTGGGGCATCTCAAGCT
GATATTGGTGTACTGGTAATTTCTGCTCGAAAAGGAGAGTTTGAAACTGG
GTTT
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