FC920560

Overview
NameFC920560
Unique NameFC920560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.605e-29
Identity = 57/123 (46.34%), Postives = 89/123 (72.36%), Query Frame = 1 
Query:  283 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            +K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA++  ++S+  A+++D  + ER +G T+++    FET     T++DAPGH+ ++ NMI+G SQAD  +L+I+A  GEFE G
Sbjct:    5 DKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDSRTIEKFEKEAEELGKKSFKYAWVLDKLKSERERGITIDIALWKFETPKYSVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAG 127
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.605e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA++  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VLV++   GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKFYVTIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.605e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA++  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VLV++   GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKFYVTIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.097e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA++  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VLV++   GEFE G
Sbjct:    2 GKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.097e-29
Identity = 59/125 (47.20%), Postives = 88/125 (70.40%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA++  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.738e-29
Identity = 58/125 (46.40%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+NVV IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET   + T++DAPGH+ ++ NMI+G SQAD  +L+I+   GEFE G
Sbjct:    2 GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_PICGU (Elongation factor 1-alpha OS=Pichia guilliermondii GN=TEF1 PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.577e-29
Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+NVV IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     T++DAPGH+ ++ NMI+G SQAD  +L+I+   GEFE G
Sbjct:    2 GKEKTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYHVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.577e-29
Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++   GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAGGVGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.577e-29
Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+NVV IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     T++DAPGH+ ++ NMI+G SQAD  +L+I+   GEFE G
Sbjct:    2 GKEKTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYHVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.577e-29
Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+NVV IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     T++DAPGH+ ++ NMI+G SQAD  +L+I+   GEFE G
Sbjct:    2 GKEKTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAG 126
The following BLAST results are available for this feature:
BLAST of FC920560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_AJECG1.605e-2946.34Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A4_OSCTI1.605e-2947.20Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A2_OSCTI1.605e-2947.20Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]
EF1A_CAEEL2.097e-2947.20Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A_APIME2.097e-2947.20Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A_YEAST2.738e-2946.40Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_PICGU3.577e-2946.40Elongation factor 1-alpha OS=Pichia guilliermondii... [more]
EF1A_DANRE3.577e-2946.40Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A_CANAL3.577e-2946.40Elongation factor 1-alpha OS=Candida albicans GN=T... [more]
EF1A3_RHIRA3.577e-2946.40Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]

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Properties
Property NameValue
Genbank descriptionC32010A01EF RVDevelop1 Citrus clementina cDNA clone C32010A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920560 ID=FC920560; Name=FC920560; organism=Citrus clementina; type=EST; length=654bp
GGGGGAATAAAAAGAGAAAGAAGAGAAACCCTAGGTGCCTTCATCACTAT
GGATATTGAGGAGGATATCCGCTCATTACAGCTTGACTCCGCAGAAGAGA
ATAATGGGGTGGTCAATCCTGGAGATGCAAGGCCAGAAGAAGTTGAGGTG
GTGGATAAGATGGAGGAAGATTCAGAGGAGGTGCAAGCAGTATCCCAGCC
TGTTCATCCTGAGCCTAAAGTGAAACACAAGGAAGTATCTGCGGTGGAAG
ATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAGCGACACTTGAAT
GTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTACCACTGGAGGCCA
GATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAATTCAAAAATATG
AGAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTATATGGCGTATATT
ATGGACACTAATGAAGAGGAGAGGATCAAGGGTAAAACAGTAGAAGTTGG
AAGAGCTCACTTTGAAACTGAGACTACTAGATTTACAATTTTGGATGCGC
CGGGTCACAAGAGTTATGTCCCTAATATGATTAGTGGGGCATCTCAAGCT
GATATTGGTGTACTGGTAATTTCTGCTCGAAAAGGAGAGTTTGAAACTGG
GTTT
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