FC920560

Overview
NameFC920560
Unique NameFC920560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.101e-29
Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA++  + S+  A+++D  + ER +G  +++    FET     TI+DAPGH+ ++ NMI+G SQAD  VLV++   GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGIQIDIALWKFETPKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.101e-29
Identity = 58/123 (47.15%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  283 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            +K H+NVV IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     T++DAPGH+ ++ NMI+G SQAD  +L+I+A  GEFE G
Sbjct:    5 DKTHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAG 127          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.101e-29
Identity = 55/123 (44.72%), Postives = 88/123 (71.54%), Query Frame = 1
Query:  283 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            +K+H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    F+T     T++DAPGH+ ++ NMI+G SQAD  +L+I++  GEFE G
Sbjct:    5 DKQHINIVVIGHVDSGKSTTTGHLIYKCGGIDQRTIEKFEKEAAELGKGSFKYAWVLDKLKSERERGITIDIALWKFQTSKYEVTVIDAPGHRDFIKNMITGTSQADCAILIIASGTGEFEAG 127          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.101e-29
Identity = 58/123 (47.15%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  283 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            +K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA++  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VLV++   GEFE G
Sbjct:    5 DKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKFYVTIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAG 127          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.968e-29
Identity = 59/120 (49.17%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  280 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE 639
            + K H+N+V IGHVD GKST  G++LF  G++    I +Y+KEA++K + ++  A++MD  +EER +G T+++    FET+   FTI+DAPGH+ +V NMI+G SQAD  VLV+SAR+GE
Sbjct:    3 SEKPHMNLVIIGHVDHGKSTLVGRLLFEHGEIPQHIIDEYKKEAEEKGKATFEFAWVMDRFKEERERGVTIDLTHRKFETDKYYFTIIDAPGHRDFVKNMITGTSQADAAVLVVSAREGE 122          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.968e-29
Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++   GEFE G
Sbjct:    2 GKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETGKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAGGVGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.968e-29
Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++   GEFE G
Sbjct:    2 GKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETGKFYITIIDAPGHRDFIKNMITGTSQADCAVLIVAGGVGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.968e-29
Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA++  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++  MI+G SQAD  VLV++   GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKFYVTIIDAPGHRDFIKKMITGTSQADCAVLVVACGTGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.041e-28
Identity = 62/124 (50.00%), Postives = 89/124 (71.77%), Query Frame = 1
Query:  280 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            + K HLN++ IGHVD GKST  G++L   G +D++TI++ E+ AK   +ES   A+++D  +EER +G T+ +    FET+   FTI+DAPGH+ +V NMI+GASQAD  +L +SARKGEFE+G
Sbjct:    2 SQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFLDEKTIKEAEEAAKKLGKESEKYAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILAVSARKGEFESG 125          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.041e-28
Identity = 57/125 (45.60%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+NVV IGHVD+GKSTT G +++  G +D RTI+++EKEA +  + S+  A+++D  + ER +G T+++    FET     T++DAPGH+ ++ NMI+G SQAD  +L+I+   GEFE G
Sbjct:    2 GKEKTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEEFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAG 126          
The following BLAST results are available for this feature:
BLAST of FC920560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_ONCVO6.101e-2946.40Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A_NEUCR6.101e-2947.15Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_ASPOR6.101e-2944.72Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1A3_OSCTI6.101e-2947.15Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A_PICTO7.968e-2949.17Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A3_XENLA7.968e-2946.40Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A2_XENLA7.968e-2946.40Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A1_OSCTI7.968e-2946.40Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A_METS51.041e-2850.00Elongation factor 1-alpha OS=Metallosphaera sedula... [more]
EF1A1_RHIRA1.041e-2845.60Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]

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Properties
Property NameValue
Genbank descriptionC32010A01EF RVDevelop1 Citrus clementina cDNA clone C32010A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920560 ID=FC920560; Name=FC920560; organism=Citrus clementina; type=EST; length=654bp
GGGGGAATAAAAAGAGAAAGAAGAGAAACCCTAGGTGCCTTCATCACTAT
GGATATTGAGGAGGATATCCGCTCATTACAGCTTGACTCCGCAGAAGAGA
ATAATGGGGTGGTCAATCCTGGAGATGCAAGGCCAGAAGAAGTTGAGGTG
GTGGATAAGATGGAGGAAGATTCAGAGGAGGTGCAAGCAGTATCCCAGCC
TGTTCATCCTGAGCCTAAAGTGAAACACAAGGAAGTATCTGCGGTGGAAG
ATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAGCGACACTTGAAT
GTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTACCACTGGAGGCCA
GATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAATTCAAAAATATG
AGAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTATATGGCGTATATT
ATGGACACTAATGAAGAGGAGAGGATCAAGGGTAAAACAGTAGAAGTTGG
AAGAGCTCACTTTGAAACTGAGACTACTAGATTTACAATTTTGGATGCGC
CGGGTCACAAGAGTTATGTCCCTAATATGATTAGTGGGGCATCTCAAGCT
GATATTGGTGTACTGGTAATTTCTGCTCGAAAAGGAGAGTTTGAAACTGG
GTTT
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