FC920560

Overview
NameFC920560
Unique NameFC920560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.359e-28
Identity = 58/125 (46.40%), Postives = 85/125 (68.00%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+NVV IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     T++DAPGH+ ++ NMI+G SQAD  +L I+   GEFE G
Sbjct:    2 GKEKLHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYMVTVIDAPGHRDFIKNMITGTSQADCAILTIAGGTGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.775e-28
Identity = 57/125 (45.60%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVDAGKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    F+T     T++DAPGH+ ++ NMI+G SQAD  +L+I+   GEFE G
Sbjct:    2 GKEKTHVNLVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKFEKEADELGKGSFKYAWVLDKLKAERERGITIDIALWKFQTPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.775e-28
Identity = 59/124 (47.58%), Postives = 89/124 (71.77%), Query Frame = 1
Query:  280 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            + K HLN++ IGH+D GKST  G++L   G +D++T+++ E+ AK   +ES   A+++D  +EER +G T+ +    FET+   FTI+DAPGH+ +V NMI+GASQAD  +LV+SA+KGE+E G
Sbjct:    2 SQKPHLNLIVIGHIDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAG 125          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.775e-28
Identity = 58/126 (46.03%), Postives = 87/126 (69.05%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            G  K H+N+V IGHVD+GKSTT G I++  G +D RTI+K+EKE+ +  + S+  A+++D  + ER +G T+++    FET    FT++DAPGHK ++ NMI+G SQAD+ +LV+ A  G F+  F
Sbjct:    2 GKEKTHINLVVIGHVDSGKSTTTGHIIYKLGGIDRRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPRYFFTVIDAPGHKDFIKNMITGTSQADVALLVVPADVGGFDGAF 127          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.318e-28
Identity = 58/120 (48.33%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  280 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE 639
            + K HLN++ IGHVD GKST  G++LF  G++    I++Y KEA+ K + ++  A++MD  +EER +G T+++    FET+   FT++DAPGH+ +V NMI+G SQAD  +LVISAR+GE
Sbjct:    3 SQKPHLNLITIGHVDHGKSTLVGRLLFEHGEIPAHIIEEYRKEAEQKGKATFEFAWVMDRFKEERERGVTIDLAHRKFETDKYYFTLIDAPGHRDFVKNMITGTSQADAAILVISAREGE 122          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.318e-28
Identity = 61/124 (49.19%), Postives = 89/124 (71.77%), Query Frame = 1
Query:  280 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            + K HLN++ IGHVD GKST  G++L   G +D++TI++ E+ AK   +ES   A+++D  +EER +G T+ +    FET+   FTI+DAPGH+ +V NMI+GASQAD  +LV+SA+KGE+E G
Sbjct:    2 SQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFLDEKTIKEAEEAAKKLGKESEKYAFLLDRLKEERERGVTINLTFMRFETKKFFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAG 125          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.318e-28
Identity = 59/124 (47.58%), Postives = 88/124 (70.97%), Query Frame = 1
Query:  280 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            + K HLN++ IGHVD GKST  G++L   G +D++T+++ E+ AK   ++S   A++MD  +EER +G T+ +    FET    FT++DAPGH+ +V NMI+GASQAD  +LV+SA+KGE+E G
Sbjct:    2 SQKPHLNLIVIGHVDHGKSTLIGRLLMDRGFIDEKTVKEAEEAAKKLGKDSEKYAFLMDRLKEERERGVTINLSFMRFETRKYFFTVIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAG 125          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.954e-28
Identity = 57/125 (45.60%), Postives = 85/125 (68.00%), Query Frame = 1
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+NVV IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++     ET     T++DAPGH+ ++ NMI+G SQAD  +L+I+   GEFE G
Sbjct:    2 GKEKAHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKSETPKYMVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAG 126          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_CALMQ (Elongation factor 1-alpha OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.954e-28
Identity = 63/122 (51.64%), Postives = 82/122 (67.21%), Query Frame = 1
Query:  286 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            K HLN+  IGHVD GKST  G++L  +G VD++   + E EAK   +E +  A+IMD  +EER +G T+E     FET    FTI+D PGH+ +V NMI GASQAD  +LV+SAR GEFE+G
Sbjct:   14 KPHLNLAIIGHVDHGKSTLTGRLLLETGYVDEKAFAELEAEAKKLGKEDFKYAWIMDRLKEERERGVTIEAMHVGFETPKYFFTIIDLPGHRDFVKNMIVGASQADAALLVVSARPGEFESG 135          
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.165e-28
Identity = 57/120 (47.50%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  280 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE 639
            + K HLN++ IGHVD GKST  G++L+  G++    I++Y KEA+ K + ++  A++MD  +EER +G T+++    FET+   FT++DAPGH+ +V NMI+G SQAD  +LVISAR+GE
Sbjct:    3 SQKPHLNLITIGHVDHGKSTLVGRLLYEHGEIPAHIIEEYRKEAEQKGKATFEFAWVMDRFKEERERGVTIDLAHRKFETDKYYFTLIDAPGHRDFVKNMITGTSQADAAILVISAREGE 122          
The following BLAST results are available for this feature:
BLAST of FC920560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_SCHCO1.359e-2846.40Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_YARLI1.775e-2845.60Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A_SULSO1.775e-2847.58Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_PLAFK1.775e-2846.03Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_THEVO2.318e-2848.33Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_SULTO2.318e-2849.19Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_SULAC2.318e-2847.58Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_PIRIN3.954e-2845.60Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_CALMQ3.954e-2851.64Elongation factor 1-alpha OS=Caldivirga maquilinge... [more]
EF1A_THEAC5.165e-2847.50Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]

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Properties
Property NameValue
Genbank descriptionC32010A01EF RVDevelop1 Citrus clementina cDNA clone C32010A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920560 ID=FC920560; Name=FC920560; organism=Citrus clementina; type=EST; length=654bp
GGGGGAATAAAAAGAGAAAGAAGAGAAACCCTAGGTGCCTTCATCACTAT
GGATATTGAGGAGGATATCCGCTCATTACAGCTTGACTCCGCAGAAGAGA
ATAATGGGGTGGTCAATCCTGGAGATGCAAGGCCAGAAGAAGTTGAGGTG
GTGGATAAGATGGAGGAAGATTCAGAGGAGGTGCAAGCAGTATCCCAGCC
TGTTCATCCTGAGCCTAAAGTGAAACACAAGGAAGTATCTGCGGTGGAAG
ATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAGCGACACTTGAAT
GTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTACCACTGGAGGCCA
GATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAATTCAAAAATATG
AGAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTATATGGCGTATATT
ATGGACACTAATGAAGAGGAGAGGATCAAGGGTAAAACAGTAGAAGTTGG
AAGAGCTCACTTTGAAACTGAGACTACTAGATTTACAATTTTGGATGCGC
CGGGTCACAAGAGTTATGTCCCTAATATGATTAGTGGGGCATCTCAAGCT
GATATTGGTGTACTGGTAATTTCTGCTCGAAAAGGAGAGTTTGAAACTGG
GTTT
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