FC920561

Overview
NameFC920561
Unique NameFC920561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_METB6 (Translation initiation factor 6 OS=Methanoregula boonei (strain 6A8) GN=eif6 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.694e-23
Identity = 65/195 (33.33%), Postives = 98/195 (50.26%), Query Frame = 3
Query:  153 FENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVND 737
            F     +GVF+++     ++     E F +     L   + ++ T+I G+ IIG L  GN  GL++    TD+EL  L+        V  + E ++A GN I  ND  A  H DL  E  E I   LGVEV   T+ G    G     +N+G +VHP  + +++  L T+  +P+  GT+N GS ++G GL VND
Sbjct:    7 FAGDPNIGVFARVAGNIAVIPPEAPEEFRNAIREGLG--VELLVTTIQGSAIIGSLVAGNSRGLVVSGLATDEELAVLKKHRK----VMLLCETMNAAGNVIMANDTFAAVHPDLPAEVAEEIGAFLGVEVIHLTLGGVRTTGMAGVATNKGVIVHPRATAQEIARLETVSGIPVGTGTINMGSGLVGTGLLVND 195          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_METBF (Translation initiation factor 6 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=eif6 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.130e-23
Identity = 65/188 (34.57%), Postives = 100/188 (53.19%), Query Frame = 3
Query:  171 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVN 734
            +GVF+  T    LV  G      +  E  L     +V+T + G+ +IG L  GN NG L  + T   E++ L       V  + +  +L+A+GN +  ND  AL H +L  +  E+IA  L VEV+R T+AG   VG     +N+G LVHP  +  +++ L  L ++P+  GT N G++M+G+GL  N
Sbjct:   13 IGVFATCTEDVVLVPTGTKPETCAILEDSLD--ARIVETLVNGSVVIGALSRGNSNGFLYSYGTDAGEMKELTG-----VEAEILPGKLNAVGNIVLANDSAALVHPELSDKAIEVIASTLKVEVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEIETLEKLFELPVNIGTTNFGTQMLGSGLLAN 193          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_METBU (Translation initiation factor 6 OS=Methanococcoides burtonii (strain DSM 6242) GN=eif6 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.007e-23
Identity = 64/188 (34.04%), Postives = 101/188 (53.72%), Query Frame = 3
Query:  171 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVN 734
            +GVF+  T    +V IG +         +L   + V+ T I G+ ++G L  GN NG L+       +L+ +      +V V+ + + L+A+GN I  ND  AL H ++   + E+I+ VLGV+V R T+AG   VG     +NRG LVHP  + ++L  L  +  +P+  GT N GS+ +G+GL  N
Sbjct:   13 LGVFATCTEDVAIVPIGTAGKAIDLLAEQLD--VKVISTLINGSIVVGSLSKGNSNGFLISRDANVSDLKDV------EVPVEVLPDMLTAVGNVILANDTAALVHPEMTDSSIEVISRVLGVDVHRGTIAGLGTVGMAGVVTNRGLLVHPMVTPDELSVLEDVFALPIELGTTNYGSQAVGSGLLAN 192          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_METKA (Translation initiation factor 6 OS=Methanopyrus kandleri GN=eif6 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.046e-22
Identity = 57/155 (36.77%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  270 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVN 734
            + VV+T++ G+ ++G L   N NG L P    + E++ +R      V V  +  +++A+GN +  NDH AL H DLD    E+I  VLG  V R  + G   VGS    +++G +VHP  + E+++ +S +L V +  GTVNRGS  +G G+ VN
Sbjct:   45 VEVVRTTVAGSNLVGALLAVNSNGALFPRHAREHEIRVVREL---GVEVDVLPSKMNAVGNLVLTNDHGALVHPDLDDHALEVIESVLGGRVVRGELGGVKTVGSAGVANSKGAVVHPGATEEEMERVSEVLGVDVEVGTVNRGSPYVGVGIVVN 196          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_HYPBU (Translation initiation factor 6 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eif6 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.330e-22
Identity = 70/190 (36.84%), Postives = 98/190 (51.58%), Query Frame = 3
Query:  171 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNI-LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVND 737
            +GV+    N   LV    +E      E  L   + V++T I    I G +  GN NGLLLP     +EL +LR  + D+V ++ +E R +ALGN IA N+  AL    +D+   + I  VLGVE   Q    NI  VGS    +NRGG+VHP  S +++  L+++  V     TVN G   + AGL  ND
Sbjct:   13 IGVYIYANNKIALVPPTLTEKDKKKIEETLG--VEVIETKIADMIINGVMIAGNDNGLLLPRIVKPEELDYLREHIGDKVRLEILEVRQTALGNLIAANNRGALVSPLIDKAILDKIKSVLGVETIYQRHLANIPTVGSMIVVTNRGGVVHPGVSDDEIRILNSVFGVEFTTATVNFGLYFVKAGLVAND 200          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_METTH (Translation initiation factor 6 OS=Methanobacterium thermoautotrophicum GN=eif6 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 67/200 (33.50%), Postives = 105/200 (52.50%), Query Frame = 3
Query:  135 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVN 734
            M  R+    +  +GV+  +T++  L+     E F       L   + V+K SI G+ + G L VGN NG ++ +   D+E+  L  +  + V   RI ER +A+GN +  ND+ A+A   L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L++P  S E++  +   L V    GTVN G  +IGA    N
Sbjct:    1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAV---RIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVAN 195          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_SULSO (Translation initiation factor 6 OS=Sulfolobus solfataricus GN=eif6 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.156e-21
Identity = 70/201 (34.83%), Postives = 109/201 (54.23%), Query Frame = 3
Query:  144 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVND 737
            RL    +  +GV+    N + ++  G      S  +  +A V+   +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE + R  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND
Sbjct:    5 RLSVFGTDNIGVYIYTNNKYTIIPRG----LDSETKENIAQVLGTELLEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEILNSKVTALGNTILANNKAALIYPEFNDIEEKIIKETLGVEDIKRGKIAQMITVGSVGVITNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIKSGLVAND 200          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_SULIY (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 69/201 (34.33%), Postives = 108/201 (53.73%), Query Frame = 3
Query:  144 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVND 737
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVAND 200          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_SULIN (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eif6 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 69/201 (34.33%), Postives = 108/201 (53.73%), Query Frame = 3
Query:  144 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVND 737
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVAND 200          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_SULIL (Translation initiation factor 6 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 69/201 (34.33%), Postives = 108/201 (53.73%), Query Frame = 3
Query:  144 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVND 737
            RL    +  +GV+    N + +V  G      S  +  +  ++   +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVAND 200          
The following BLAST results are available for this feature:
BLAST of FC920561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_METB64.694e-2333.33Translation initiation factor 6 OS=Methanoregula b... [more]
IF6_METBF6.130e-2334.57Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_METBU8.007e-2334.04Translation initiation factor 6 OS=Methanococcoide... [more]
IF6_METKA1.046e-2236.77Translation initiation factor 6 OS=Methanopyrus ka... [more]
IF6_HYPBU2.330e-2236.84Translation initiation factor 6 OS=Hyperthermus bu... [more]
IF6_METTH5.190e-2233.50Translation initiation factor 6 OS=Methanobacteriu... [more]
IF6_SULSO1.156e-2134.83Translation initiation factor 6 OS=Sulfolobus solf... [more]
IF6_SULIY1.510e-2134.33Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIN1.510e-2134.33Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIL1.510e-2134.33Translation initiation factor 6 OS=Sulfolobus isla... [more]

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Properties
Property NameValue
Genbank descriptionC32010A02EF RVDevelop1 Citrus clementina cDNA clone C32010A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920561 ID=FC920561; Name=FC920561; organism=Citrus clementina; type=EST; length=739bp
GGATTTTATTGATATGGATATTCTGTACATGTTCGGTGGCTAACAGAAAA
ATCGAATTTGTATGTTATTCTTGCAGGTCTTGTGCTTTGATTCGGTCCAT
CTTTTAATCGGTTCAATTCTGTTAATTTGTAATCATGGCAACCAGACTTA
TGTTTGAGAATTCGTGTGAGGTTGGTGTGTTTTCCAAGCTCACTAATGCT
TTTTGCTTGGTCGCAATTGGAGGTTCTGAGAGCTTCTACAGCACATTTGA
GGCGGAGTTAGCAGATGTTATTCCTGTTGTTAAAACATCAATTGGTGGCA
ACAGGATTATCGGGCGGCTTTGTGTTGGTAACAAAAATGGGCTTCTCTTG
CCACACACAACCACAGACCAAGAGCTTCAACACTTGAGGAATAGTCTACC
TGATCAAGTTGTTGTCCAGCGTATTGAAGAGAGGCTATCTGCTCTGGGAA
ATTGCATAGCATGCAATGACCATGTTGCTCTTGCACACACAGATCTTGAC
AGGGAAACGGAGGAAATTATTGCAGATGTTCTTGGAGTAGAAGTTTTTAG
GCAGACAGTTGCCGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCAGCA
ACAGGGGTGGCTTGGTCCACCCTCATACATCCATTGAAGACTTGGATGAA
CTCTCTACACTCTTGCAAGTACCTTTGGTTGCTGGCACTGTGAACCGTGG
AAGTGAAATGATAGGTGCTGGGTTAACTGTGAATGACTG
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