FC920561

Overview
NameFC920561
Unique NameFC920561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_HALS3 (Translation initiation factor 6 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 58/198 (29.29%), Postives = 96/198 (48.48%), Query Frame = 3
Query:  144 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVND 737
            R  F  S  +GVF++ T +  LV     + F  +   EL   +P V+T++GG+  +G L  GN +GLL+ +   ++E   +  +    V V  +   ++A GN +  ND  A  H+ L  +    + + L V   R  +AG   VG+    +  G L HP  +  +L+ +   L V    GTVN G+ ++G+GL   D
Sbjct:    3 RAAFRGSAYIGVFARATESCVLVRPDLDDDFVDSIADELG--VPAVQTTVGGSSTVGSLAAGNSSGLLVSNRIRERERDRIEAA---GVTVGELPGAVNAAGNVVVANDDGAYVHSGLSDDAVAAVEETLDVSATRGQLAGVDTVGTAAVATTDGVLCHPKATDAELERIEETLGVYADVGTVNYGAPLVGSGLVAAD 195          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_METMJ (Translation initiation factor 6 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.014e-19
Identity = 61/188 (32.45%), Postives = 95/188 (50.53%), Query Frame = 3
Query:  171 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVN 734
            +GV++++     +V  G    F +    EL   + +V T I G+ IIG L  GN  GL++    TD+EL      L +   V  ++  ++A GN I  ND VA  H ++  +  E I   L V V R T+ G   VG     +N+G LVHP  +  ++  L  ++ +P+  G+VN GS ++G GL  N
Sbjct:   13 IGVYARVFEDIAIVYPGAPAEFTAALARELD--VEIVSTFIQGSSIIGSLVSGNSQGLVVSGLATDEELA----VLSEYRDVFLLKGPMNAAGNIILANDCVAAVHPEMQIDVAEEIGSFLEVPVVRLTLGGIKTVGMAGFATNKGILVHPRANDTEIANLERIVDLPIGLGSVNMGSGLVGTGLLAN 194          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_CENSY (Translation initiation factor 6 OS=Cenarchaeum symbiosum GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19
Identity = 50/150 (33.33%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  285 TSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVN 734
            TS+   R++G L V N +G+++P T ++ E +  +      VVV  ++ + +ALGN I+ ND   +      RE   IIAD LG+EV ++ +AG   VG+    ++ GG++HP T  ED+  +S ++ V +   T+N G   + +GL  N
Sbjct:   50 TSVANTRLMGTLMVLNNSGIIMPSTISEIEYEFYKKHTDLNVVV--LDTKFTALGNMISVNDRGGVVSPVFPREEVRIIADALGIEVIQRRIAGYNQVGAMMVATSGGGIIHPETDGEDVKRISEVMGVHMEPATINGGIPFVSSGLLAN 197          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_METJA (Translation initiation factor 6 OS=Methanocaldococcus jannaschii GN=eif6 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.196e-18
Identity = 68/206 (33.01%), Postives = 110/206 (53.40%), Query Frame = 3
Query:  135 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPV--VKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEMIGAGLTVN 734
            M  R  F     +GV +  T    L+ I   +   +    E+++V+    ++T+IGG+ ++G L V NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL   +L ++ ++ I D L VEV   T+A    VGS    +N+G L HP    ++L+ L +L +V  +  GT N+G+  +GA +  N
Sbjct:    3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVN----EVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIAN 203          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_HALLT (Translation initiation factor 6 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.196e-18
Identity = 61/198 (30.81%), Postives = 94/198 (47.47%), Query Frame = 3
Query:  144 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVND 737
            R  F  S  VGVF++  +   LV     E        EL      + T++GG   +G L  GN+NG+L+    T++E   +  +   +V    +   ++A GN +  ND+ A  H DL RE+   I + LGV V R  +     VG+    +N G L HP ++  +L  +   L V    GT+N G+ +IG+GL   D
Sbjct:    3 RATFTGSSYVGVFARAIDDLLLVRPDVDEELADALGEELG--AEPLLTTVGGANTVGSLATGNENGVLVSARATEREQSRIAEAADCEV--GELPGEINAAGNVVLANDYGAYVHPDLPRESIVTIRETLGVPVVRGDLGDVRTVGTAAVANNTGVLCHPKSTESELQAVEEALDVRADLGTINYGAPLIGSGLIATD 196          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 56/188 (29.79%), Postives = 91/188 (48.40%), Query Frame = 3
Query:  171 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVN 734
            +GV+    + F L+     E         L+  +   + S+ G R++G    GN NGL++P    D EL+HL++ L   +VV   + R + +GN +  ND+  +A   L +   + IAD LGVE  + ++     VGS    +NRG  + P  + E++  +   L+V     TVNRG   +  GL  N
Sbjct:   15 IGVYIFANDRFALIPYDAPEKLDRKIAENLS--VDAFRVSVAGTRLVGIFLAGNNNGLVVPRVILDSELEHLKSLLDVNIVVLE-DVRETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGSLSVATNRGVALPPLATEEEIKSVEEALKVKANVLTVNRGKMFLRTGLVAN 199          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_PYRAE (Translation initiation factor 6 OS=Pyrobaculum aerophilum GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 56/154 (36.36%), Postives = 88/154 (57.14%), Query Frame = 3
Query:  276 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVND 737
            V + ++  + ++G   V N NG+LLP    ++E++ L  +L   V +  I  + +A+ N I   + VAL    L+    +++ADVLGVEV   T+AGN LVG+    ++RG LV P  + +DL +LS   +V +  GTVNRG   +  G+ VND
Sbjct:   48 VARFTVARSPLLGIFTVVNDNGVLLPPLVLEEEVR-LFKALGLNVDI--INTKYTAISNLILAGNKVALVSPLLEPSARKVVADVLGVEVIVDTIAGNPLVGALAVLNSRGLLVAPEATDDDLKKLSEYFKVRVDVGTVNRGKSFLRGGIVVND 198          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_THEVO (Translation initiation factor 6 OS=Thermoplasma volcanium GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.481e-18
Identity = 58/202 (28.71%), Postives = 102/202 (50.50%), Query Frame = 3
Query:  129 VIMATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVN 734
            VI  T +M   S  +G+++K  +    +     E   + F   L   + + + SI G+ +IG +   N NG++LP+ +    L  +     D   V  ++++++A+GN I  NDH A+ H     +  + I D LGVE  R ++   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  +GA +  N
Sbjct:    3 VIRKTSVM--RSSFIGIYAKAWDDVAFITKMADEKTVNEFREVLQ--VDIKRISIDGSTLIGTMIAVNSNGIVLPYGSNIDGLDGI-----DGRNVLYLKDKINAVGNDIIANDHGAIIHKAFSNKARKEIEDTLGVETIRTSIGNILTVGSASVLTSKGMLVNPETDDDELEFLKDFFKVSVKSGTANFGSIYVGASIVAN 195          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_UNCMA (Translation initiation factor 6 OS=Uncultured methanogenic archaeon RC-I GN=eif6 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.546e-18
Identity = 55/150 (36.67%), Postives = 82/150 (54.67%), Query Frame = 3
Query:  276 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGL 725
            VV+T I  + +IG +  GN NG ++   T D+E     N L +   V R++ +++A GN I  ND  AL H  L  +  E I   L VEV R T+ G   VG     +N+G LVHP  + E+L  L  L ++P+  GTV+ GS ++G+ +
Sbjct:   46 VVRTLINESTLIGSMMTGNSNGFIVSDLTLDREA----NLLQEHGKVTRLKGKMTAAGNLILANDTAALVHPALTDKNIEAIEKTLKVEVRRGTIGGLKTVGMAGCATNKGILVHPRATEEELTVLEDLFKLPVDIGTVSFGSPLVGSAI 191          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_PYRAR (Translation initiation factor 6 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=eif6 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.546e-18
Identity = 55/154 (35.71%), Postives = 86/154 (55.84%), Query Frame = 3
Query:  276 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVND 737
            V + ++  + ++G   V N NG+LLP    ++E++ L  +L   V V  +  + +A+ N I   + VAL    L+    +++ADVLGVEV   T+AGN LVGS    ++RG LV P  + EDL +L+   +     GTVN+G   +  G+ VND
Sbjct:   48 VARLTVAKSPLLGIFTVVNDNGVLLPPMVLEEEIR-LFKALGLNVEV--LNTKYTAISNLILAGNKVALVSPLLEPSVRKVVADVLGVEVIVDTIAGNPLVGSLAVLNSRGVLVAPEATDEDLKKLAEYFKAKTDLGTVNKGKSFLRGGIVVND 198          
The following BLAST results are available for this feature:
BLAST of FC920561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_HALS35.371e-1929.29Translation initiation factor 6 OS=Halobacterium s... [more]
IF6_METMJ7.014e-1932.45Translation initiation factor 6 OS=Methanoculleus ... [more]
IF6_CENSY9.161e-1933.33Translation initiation factor 6 OS=Cenarchaeum sym... [more]
IF6_METJA1.196e-1833.01Translation initiation factor 6 OS=Methanocaldococ... [more]
IF6_HALLT1.196e-1830.81Translation initiation factor 6 OS=Halorubrum lacu... [more]
IF6_THEPD2.041e-1829.79Translation initiation factor 6 OS=Thermofilum pen... [more]
IF6_PYRAE2.041e-1836.36Translation initiation factor 6 OS=Pyrobaculum aer... [more]
IF6_THEVO3.481e-1828.71Translation initiation factor 6 OS=Thermoplasma vo... [more]
IF6_UNCMA4.546e-1836.67Translation initiation factor 6 OS=Uncultured meth... [more]
IF6_PYRAR4.546e-1835.71Translation initiation factor 6 OS=Pyrobaculum ars... [more]

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Properties
Property NameValue
Genbank descriptionC32010A02EF RVDevelop1 Citrus clementina cDNA clone C32010A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920561 ID=FC920561; Name=FC920561; organism=Citrus clementina; type=EST; length=739bp
GGATTTTATTGATATGGATATTCTGTACATGTTCGGTGGCTAACAGAAAA
ATCGAATTTGTATGTTATTCTTGCAGGTCTTGTGCTTTGATTCGGTCCAT
CTTTTAATCGGTTCAATTCTGTTAATTTGTAATCATGGCAACCAGACTTA
TGTTTGAGAATTCGTGTGAGGTTGGTGTGTTTTCCAAGCTCACTAATGCT
TTTTGCTTGGTCGCAATTGGAGGTTCTGAGAGCTTCTACAGCACATTTGA
GGCGGAGTTAGCAGATGTTATTCCTGTTGTTAAAACATCAATTGGTGGCA
ACAGGATTATCGGGCGGCTTTGTGTTGGTAACAAAAATGGGCTTCTCTTG
CCACACACAACCACAGACCAAGAGCTTCAACACTTGAGGAATAGTCTACC
TGATCAAGTTGTTGTCCAGCGTATTGAAGAGAGGCTATCTGCTCTGGGAA
ATTGCATAGCATGCAATGACCATGTTGCTCTTGCACACACAGATCTTGAC
AGGGAAACGGAGGAAATTATTGCAGATGTTCTTGGAGTAGAAGTTTTTAG
GCAGACAGTTGCCGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCAGCA
ACAGGGGTGGCTTGGTCCACCCTCATACATCCATTGAAGACTTGGATGAA
CTCTCTACACTCTTGCAAGTACCTTTGGTTGCTGGCACTGTGAACCGTGG
AAGTGAAATGATAGGTGCTGGGTTAACTGTGAATGACTG
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