FC920561

Overview
NameFC920561
Unique NameFC920561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15108 contig Ccv1_Contig15108:24..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.755e-18
Identity = 61/200 (30.50%), Postives = 98/200 (49.00%), Query Frame = 3
Query:  135 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVN 734
            M  ++   NS  +GV+++  N    + +  S+     FE  L     V K SIG + +IG +   N NG+++     D  + +L++   +   +  I  +L+A GN I  NDH AL H        + I DVLGVE  + ++AG   VGS    ++RG LV      +++  LS L ++ +  GT N GS  +GA +  N
Sbjct:    1 MIKKVSILNSNFIGVYARTWNDVTFLPVNISDEEKRIFEETLKT--EVYKISIGNSFLIGSMLSMNSNGIVV----ADHGIDNLKSLNINGRNILSINNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGSVAVLNDRGMLVTSEADEDEIKYLSDLFKINVKTGTANFGSNYVGASIIAN 194          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_ARCFU (Translation initiation factor 6 OS=Archaeoglobus fulgidus GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.013e-17
Identity = 52/188 (27.66%), Postives = 98/188 (52.13%), Query Frame = 3
Query:  171 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVN 734
            +G+++K++  + +V +   E      + +L   + V+ T I G+ ++G +   N  G ++       EL+ L  SL   V    IE  ++  GN +  ND   +A+ +++    E +AD + +E+ + TV G   VG     +NRGGL +P+ +  +  +L  +  V ++ GTVN G++M+G+GL  N
Sbjct:   11 IGLYAKVSEEYAVVGVN-HEPLIDAIQEKLD--VDVIVTKIAGSELVGAMMALNSRGAVVSDQVLSSELRELEKSLDVLV----IETPMTCFGNNLLINDRGGIANPEMESSVVEKVADFMDIELVKGTVGGIKTVGMAAVVTNRGGLANPNINEWEAKKLQEVAGVEVLTGTVNFGTDMVGSGLVAN 191          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_METLZ (Translation initiation factor 6 OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eif6 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.947e-17
Identity = 60/203 (29.56%), Postives = 103/203 (50.74%), Query Frame = 3
Query:  135 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL---QVPLVAGTVNRGSEMIGAGLTVN 734
            M   L       +GV++++     +V +   + F     AE  DV  V++T + G+ +IG L  GN  G ++     D EL+ L+    D ++   + E ++A GN I  ND  A+ H D+     E++AD L V++   + AG   VG  C+ +N G L+   ++ E++++L   +    V +  G+VN GS +IG GL +N
Sbjct:    1 MDPTLSLNGDPNIGVYARVFEDLAVVPVEAPKEFRDKI-AEALDV-EVIETFVQGSSVIGLLLTGNSRGFVVSGLIQDSELEILQE-YGDCLL---LGEEMNAAGNVILTNDSFAVVHPDMSSAMREMVADFLKVKIIPMSFAGVGTVGMTCACTNTGVLLPARSTPEEIEKLERSIDDANVAIGTGSVNMGSGLIGTGLLIN 197          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_METVS (Translation initiation factor 6 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eif6 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 62/204 (30.39%), Postives = 106/204 (51.96%), Query Frame = 3
Query:  135 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEMIGAGLTVN 734
            M  +  F     +GV S  T  + L  +   ++     +  L   IPV + +I  + +IG LCVGN NGLL+P+  T +E+  +++ L +    V +++++ + +A GN I  N+   +   +L +   ++I DVLGVE      A    VGS    +++G LVHP T   +L+ ++ +L+V  V  GT NRG   +G+ +  N
Sbjct:    1 MIIKTYFSGVSTIGVLSLATEDYGLFPLSVEKNTLEKMKEVLN--IPVTQLNISNSSLIGSLCVGNSNGLLVPNIVTSKEIALIKDFLKENSLDVNLEKLKAKNTAFGNLILTNNKGCIISEEL-QNFRKVIEDVLGVESGVGNYASLPTVGSNGVATDKGCLVHPLTDELELEWITDVLKVDYVGRGTANRGVTSVGSCILAN 201          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_SULAC (Translation initiation factor 6 OS=Sulfolobus acidocaldarius GN=eif6 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 54/154 (35.06%), Postives = 86/154 (55.84%), Query Frame = 3
Query:  276 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEV-FRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVN 734
            +++T+I  + ++G L  GN + +LLP T    E++ ++    D V V+ ++ R +ALGN I  N H AL + DL       +   L ++   + T+A  I VGS    +++ GLVH   + E+L +LS L +V L +GTVN GS  I +GL  N
Sbjct:   47 IIQTTISKSVLVGILVTGNNDVILLPRTALADEIKVIKEQAKD-VRVEVVDIRPTALGNIILSNTHGALIYQDLSEAEINKVKKALQIDTAIKGTIANIITVGSVAVITDKAGLVHIDATEEELKKLSELFKVKLDSGTVNFGSVFIRSGLVAN 199          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_SULTO (Translation initiation factor 6 OS=Sulfolobus tokodaii GN=eif6 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 57/170 (33.53%), Postives = 96/170 (56.47%), Query Frame = 3
Query:  228 ESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVN 734
            +    TF+ E      +++T+I  + +IG    GN N +LLP    D+E++ +++   D V V+ ++ R +ALGN I  N + AL + +L     + I + L ++ + + ++A  I VGS    +++ GLVH  T+ E+LD+LS L +V +  GTVN GS  I +GL  N
Sbjct:   37 QKIQETFKTE------IIQTTIAKSFLIGIFVAGNNNVILLPRNVDDEEVKKIKDIARD-VRVEILDIRPTALGNIILTNSYGALIYPELSSIEFKKIKESLQIDNIEKGSIANIITVGSVGVITDKAGLVHIDTTEEELDKLSKLFRVKIDTGTVNFGSAFIHSGLIAN 199          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_META3 (Translation initiation factor 6 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eif6 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16
Identity = 58/192 (30.21%), Postives = 99/192 (51.56%), Query Frame = 3
Query:  171 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEMIGAGLTVN 734
            +GV S  T  F L      E+  + F+  L   +PV   +IG + +IG LC  N  G++LP  T ++E   L + L +    ++V+ I  + +A GN I  ND   +   +L  +  +   D+  VEV  + +A    VGS    +N+G LVHP T+ E+L+ +  +L++  +  GT ++G+  +GA +  N
Sbjct:   13 IGVLSLSTEKFGLAPYFAEENTINKFKKVLD--VPVKALNIGNSSLIGALCCANSYGIILPPFTLNREKTILSDFLKENDIDIIVKEINAKNTAFGNLILLNDKGCIISEEL-ADFRKTFEDIFDVEVVAKNIAELPTVGSNGVATNKGALVHPDTTDEELELIKDVLKLKCIERGTASKGTPSVGACIVAN 201          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_METMP (Translation initiation factor 6 OS=Methanococcus maripaludis GN=eif6 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.258e-16
Identity = 57/159 (35.85%), Postives = 89/159 (55.97%), Query Frame = 3
Query:  270 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEMIGAGLTVN 734
            IP  + +I  + +IG LCVGN NGLL+P+ TT++EL+ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPNITTEKELELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILAN 201          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_METM6 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eif6 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.558e-16
Identity = 56/159 (35.22%), Postives = 88/159 (55.35%), Query Frame = 3
Query:  270 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEMIGAGLTVN 734
            IP  + +I  + +IG LCVGN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELATVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILAN 201          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_METM7 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=eif6 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 56/159 (35.22%), Postives = 88/159 (55.35%), Query Frame = 3
Query:  270 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEMIGAGLTVN 734
            IP  + +I  + +IG LCVGN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILAN 201          
The following BLAST results are available for this feature:
BLAST of FC920561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_PICTO7.755e-1830.50Translation initiation factor 6 OS=Picrophilus tor... [more]
IF6_ARCFU1.013e-1727.66Translation initiation factor 6 OS=Archaeoglobus f... [more]
IF6_METLZ2.947e-1729.56Translation initiation factor 6 OS=Methanocorpuscu... [more]
IF6_METVS5.027e-1730.39Translation initiation factor 6 OS=Methanococcus v... [more]
IF6_SULAC6.565e-1735.06Translation initiation factor 6 OS=Sulfolobus acid... [more]
IF6_SULTO8.574e-1733.53Translation initiation factor 6 OS=Sulfolobus toko... [more]
IF6_META31.120e-1630.21Translation initiation factor 6 OS=Methanococcus a... [more]
IF6_METMP3.258e-1635.85Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_METM65.558e-1635.22Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_METM79.480e-1635.22Translation initiation factor 6 OS=Methanococcus m... [more]

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Properties
Property NameValue
Genbank descriptionC32010A02EF RVDevelop1 Citrus clementina cDNA clone C32010A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920561 ID=FC920561; Name=FC920561; organism=Citrus clementina; type=EST; length=739bp
GGATTTTATTGATATGGATATTCTGTACATGTTCGGTGGCTAACAGAAAA
ATCGAATTTGTATGTTATTCTTGCAGGTCTTGTGCTTTGATTCGGTCCAT
CTTTTAATCGGTTCAATTCTGTTAATTTGTAATCATGGCAACCAGACTTA
TGTTTGAGAATTCGTGTGAGGTTGGTGTGTTTTCCAAGCTCACTAATGCT
TTTTGCTTGGTCGCAATTGGAGGTTCTGAGAGCTTCTACAGCACATTTGA
GGCGGAGTTAGCAGATGTTATTCCTGTTGTTAAAACATCAATTGGTGGCA
ACAGGATTATCGGGCGGCTTTGTGTTGGTAACAAAAATGGGCTTCTCTTG
CCACACACAACCACAGACCAAGAGCTTCAACACTTGAGGAATAGTCTACC
TGATCAAGTTGTTGTCCAGCGTATTGAAGAGAGGCTATCTGCTCTGGGAA
ATTGCATAGCATGCAATGACCATGTTGCTCTTGCACACACAGATCTTGAC
AGGGAAACGGAGGAAATTATTGCAGATGTTCTTGGAGTAGAAGTTTTTAG
GCAGACAGTTGCCGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCAGCA
ACAGGGGTGGCTTGGTCCACCCTCATACATCCATTGAAGACTTGGATGAA
CTCTCTACACTCTTGCAAGTACCTTTGGTTGCTGGCACTGTGAACCGTGG
AAGTGAAATGATAGGTGCTGGGTTAACTGTGAATGACTG
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